Variant report

Variant	rs12354861
Chromosome Location	chr10:27297832-27297833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27295657..27298267-chr10:27301288..27303718,2	K562	blood:

Variant related genes	Relation type
ENSG00000107890	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10829158	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10829170	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10829171	0.85[EUR][1000 genomes]
rs11015444	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11015445	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11015448	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11015459	0.84[EUR][1000 genomes]
rs11015462	0.84[EUR][1000 genomes]
rs11015465	0.84[EUR][1000 genomes]
rs11015466	0.84[EUR][1000 genomes]
rs11015468	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11015471	0.84[EUR][1000 genomes]
rs11015474	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11015476	0.84[EUR][1000 genomes]
rs11015477	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11015478	0.84[EUR][1000 genomes]
rs11015482	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12354840	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12354955	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12355949	0.84[EUR][1000 genomes]
rs12358854	0.88[EUR][1000 genomes]
rs12569476	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1854646	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2149941	0.84[ASN][1000 genomes]
rs2274742	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3781097	0.84[EUR][1000 genomes]
rs3781098	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4747583	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56907673	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60521923	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61081993	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6482590	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7900343	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7907257	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12354861	YME1L1	Cis_1M	lymphoblastoid	RTeQTL
rs12354861	MASTL	cis	lung	GTEx
rs12354861	MASTL	cis	Thyroid	GTEx

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:27278600-27309200	Weak transcription	HSMM	muscle
3	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
4	chr10:27284400-27310400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:27284800-27308800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:27285000-27319200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:27285400-27312000	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:27285400-27319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:27286200-27302600	Weak transcription	Fetal Heart	heart
10	chr10:27286400-27310000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:27286400-27316600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:27286600-27311800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr10:27286600-27312000	Weak transcription	Fetal Thymus	thymus
14	chr10:27287000-27308800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:27287000-27312000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:27287800-27310000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
19	chr10:27288400-27329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:27288600-27312000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr10:27288600-27312000	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr10:27288800-27298800	Weak transcription	GM12878-XiMat	blood
23	chr10:27288800-27357000	Weak transcription	Gastric	stomach
24	chr10:27289200-27302400	Weak transcription	Right Ventricle	heart
25	chr10:27289200-27361200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr10:27289600-27309800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:27289600-27310000	Weak transcription	HSMMtube	muscle
28	chr10:27289600-27312400	Weak transcription	Brain Substantia Nigra	brain
29	chr10:27289600-27314200	Weak transcription	Spleen	Spleen
30	chr10:27289600-27318800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr10:27289600-27360800	Weak transcription	Hela-S3	cervix
32	chr10:27289800-27360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:27290200-27351400	Weak transcription	Thymus	Thymus
34	chr10:27290200-27361400	Weak transcription	Placenta	Placenta
35	chr10:27290400-27309600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr10:27290600-27300400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:27290600-27310000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:27290600-27314800	Weak transcription	Fetal Kidney	kidney
39	chr10:27290800-27326800	Weak transcription	Osteobl	bone
40	chr10:27291000-27310200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr10:27291000-27312200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:27291200-27316600	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr10:27291200-27324000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr10:27291400-27304200	Weak transcription	Fetal Muscle Leg	muscle
45	chr10:27291400-27324000	Weak transcription	Brain Germinal Matrix	brain
46	chr10:27291400-27324200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr10:27291400-27360600	Weak transcription	Lung	lung
48	chr10:27291600-27304400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr10:27291600-27308800	Weak transcription	Fetal Stomach	stomach
50	chr10:27291600-27312600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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