Variant report

Variant	rs10829214
Chromosome Location	chr10:27512944-27512945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27503068..27505170-chr10:27511263..27513573,2	K562	blood:
2	chr10:27511405..27514372-chr10:27529616..27531388,2	K562	blood:
3	chr10:27508030..27510726-chr10:27511463..27512978,2	K562	blood:
4	chr10:27511969..27517991-chr10:27527633..27531388,6	K562	blood:
5	chr10:27511986..27514445-chr10:27529817..27531647,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107897	Chromatin interaction

Extended variants
information (count: 144 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs1002351	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159601	0.85[ASN][1000 genomes]
rs10466100	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10764681	0.91[ASN][1000 genomes]
rs10764682	0.91[ASN][1000 genomes]
rs10764687	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10829187	0.81[ASN][1000 genomes]
rs10829189	0.81[ASN][1000 genomes]
rs10829196	0.85[ASN][1000 genomes]
rs10829209	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10829215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829216	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015513	0.90[AMR][1000 genomes]
rs11015544	0.90[AMR][1000 genomes]
rs11015562	0.85[ASN][1000 genomes]
rs11015584	0.90[AMR][1000 genomes]
rs11015602	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11015607	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015608	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015609	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015610	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015611	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015612	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015614	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015615	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813084	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11813101	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11813776	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11815019	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11816764	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11816767	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11818136	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11818993	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12098587	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12098618	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12240963	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12241350	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12243607	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246088	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12246158	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12247183	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12250031	1.00[CEU][hapmap]
rs12251316	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253696	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12257786	1.00[CEU][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259138	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12259499	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261094	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261617	0.90[AMR][1000 genomes]
rs12262674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268796	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1557163	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1557164	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1557165	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1557166	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16927640	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16927646	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275751	0.85[ASN][1000 genomes]
rs34037342	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34613194	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34856168	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36121140	0.91[ASN][1000 genomes]
rs3780923	0.85[ASN][1000 genomes]
rs3818962	0.89[ASN][1000 genomes]
rs3818965	0.89[ASN][1000 genomes]
rs3818968	0.89[ASN][1000 genomes]
rs3824594	0.91[ASN][1000 genomes]
rs41314978	0.96[ASN][1000 genomes]
rs55872244	0.89[ASN][1000 genomes]
rs55884764	0.89[ASN][1000 genomes]
rs56787693	0.82[ASN][1000 genomes]
rs57096075	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57320669	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57470366	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57563582	0.80[ASN][1000 genomes]
rs57704178	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58326983	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58649395	0.91[ASN][1000 genomes]
rs58843203	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59116633	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59638069	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59935135	0.89[ASN][1000 genomes]
rs59947739	0.89[ASN][1000 genomes]
rs61082197	0.90[AMR][1000 genomes]
rs61125165	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61607571	0.82[ASN][1000 genomes]
rs61686723	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61737707	0.84[ASN][1000 genomes]
rs61737928	0.84[ASN][1000 genomes]
rs6482599	0.90[AMR][1000 genomes]
rs6482605	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6482606	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6482609	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482610	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482611	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482612	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7068182	0.96[ASN][1000 genomes]
rs7068463	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7069127	0.84[ASN][1000 genomes]
rs7069761	0.84[ASN][1000 genomes]
rs7070377	0.84[ASN][1000 genomes]
rs7070508	0.84[ASN][1000 genomes]
rs7072412	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7074120	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7084392	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7084515	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7085266	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7087198	0.85[ASN][1000 genomes]
rs7090639	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7091897	0.84[ASN][1000 genomes]
rs7092591	0.84[ASN][1000 genomes]
rs7092612	0.84[ASN][1000 genomes]
rs7358044	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7358057	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74126939	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74126942	0.96[ASN][1000 genomes]
rs74126943	0.96[ASN][1000 genomes]
rs74126946	0.89[ASN][1000 genomes]
rs74126948	0.84[ASN][1000 genomes]
rs7897124	0.96[ASN][1000 genomes]
rs7898083	0.96[ASN][1000 genomes]
rs7898338	0.96[ASN][1000 genomes]
rs7898820	0.89[ASN][1000 genomes]
rs7900802	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7902900	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7903450	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7904576	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7906528	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907326	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908434	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909359	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7910142	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7912056	0.89[ASN][1000 genomes]
rs7913638	0.89[ASN][1000 genomes]
rs7914017	0.89[ASN][1000 genomes]
rs7920178	0.91[ASN][1000 genomes]
rs7920608	0.91[ASN][1000 genomes]
rs7923708	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7923846	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9731310	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv894980	chr10:27477285-27526531	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10829214	YME1L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27473200-27524200	Weak transcription	Stomach Mucosa	stomach
2	chr10:27475600-27528600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:27476200-27528600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:27481600-27527800	Weak transcription	Psoas Muscle	Psoas
5	chr10:27484800-27513000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:27484800-27513200	Strong transcription	Fetal Intestine Large	intestine
7	chr10:27488600-27528600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:27491800-27527800	Weak transcription	Fetal Brain Male	brain
9	chr10:27494800-27528200	Weak transcription	K562	blood
10	chr10:27500000-27528000	Weak transcription	NHLF	lung
11	chr10:27500000-27528400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:27500200-27519800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr10:27500800-27528000	Weak transcription	HMEC	breast
14	chr10:27501000-27528000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:27503200-27528200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr10:27504000-27515400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr10:27504000-27528200	Weak transcription	Brain Substantia Nigra	brain
18	chr10:27504800-27514600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr10:27505200-27527800	Weak transcription	Right Ventricle	heart
20	chr10:27505600-27519400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:27505600-27528000	Weak transcription	NHEK	skin
22	chr10:27506000-27519800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr10:27508200-27515400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:27508400-27528400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:27508600-27516400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:27508600-27519800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr10:27508600-27527800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:27508600-27527800	Weak transcription	Colonic Mucosa	Colon
29	chr10:27508600-27529000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr10:27508800-27516200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr10:27508800-27516600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:27508800-27518200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:27508800-27519400	Weak transcription	Gastric	stomach
34	chr10:27508800-27522000	Weak transcription	Lung	lung
35	chr10:27508800-27523400	Weak transcription	HepG2	liver
36	chr10:27508800-27527800	Weak transcription	Pancreas	Pancrea
37	chr10:27508800-27527800	Weak transcription	Spleen	Spleen
38	chr10:27508800-27528000	Weak transcription	Brain Germinal Matrix	brain
39	chr10:27508800-27528600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr10:27508800-27528600	Weak transcription	Esophagus	oesophagus
41	chr10:27508800-27528600	Weak transcription	Thymus	Thymus
42	chr10:27508800-27528600	Weak transcription	HSMMtube	muscle
43	chr10:27508800-27528800	Weak transcription	Aorta	Aorta
44	chr10:27508800-27529000	Weak transcription	Small Intestine	intestine
45	chr10:27509000-27513200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr10:27509000-27514800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr10:27509400-27522400	Weak transcription	Ovary	ovary
48	chr10:27509600-27515000	Weak transcription	Brain Hippocampus Middle	brain
49	chr10:27509600-27524000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr10:27509600-27526000	Weak transcription	Fetal Heart	heart

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