Variant report

Variant	rs6482599
Chromosome Location	chr10:27445944-27445945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:27445449-27446015	GM12878	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:27443444..27445356-chr10:27445718..27447282,2	MCF-7	breast:
2	chr10:27442535..27445982-chr10:27528407..27534290,13	K562	blood:
3	chr10:27425252..27427965-chr10:27444886..27446851,2	MCF-7	breast:
4	chr10:27442176..27446829-chr10:27524472..27534671,19	K562	blood:
5	chr10:27441114..27446089-chr10:27527560..27532728,23	MCF-7	breast:
6	chr10:27445313..27446905-chr10:27529992..27532345,2	MCF-7	breast:

No data

Variant related genes	Relation type
YME1L1	TF binding region
ENSG00000107897	Chromatin interaction
ENSG00000136758	Chromatin interaction
ENSG00000263577	Chromatin interaction
ENSG00000120539	Chromatin interaction
ENSG00000262412	Chromatin interaction

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs1002351	0.90[AMR][1000 genomes]
rs10159601	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10466100	0.90[AMR][1000 genomes]
rs10764681	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10764682	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10829175	0.81[AMR][1000 genomes]
rs10829179	0.81[AMR][1000 genomes]
rs10829182	0.81[AMR][1000 genomes]
rs10829187	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10829189	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10829196	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10829198	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10829209	0.90[AMR][1000 genomes]
rs10829214	0.90[AMR][1000 genomes]
rs10829215	0.90[AMR][1000 genomes]
rs10829216	0.90[AMR][1000 genomes]
rs11015513	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11015524	0.81[AMR][1000 genomes]
rs11015544	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015562	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11015584	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11015585	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11015602	0.90[AMR][1000 genomes]
rs11015607	0.90[AMR][1000 genomes]
rs11015610	0.90[AMR][1000 genomes]
rs11015611	0.90[AMR][1000 genomes]
rs11015612	0.90[AMR][1000 genomes]
rs11015614	0.90[AMR][1000 genomes]
rs11015615	0.90[AMR][1000 genomes]
rs11813084	0.90[AMR][1000 genomes]
rs11813101	0.90[AMR][1000 genomes]
rs11813776	0.90[AMR][1000 genomes]
rs11815019	0.90[AMR][1000 genomes]
rs11816716	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11816764	0.90[AMR][1000 genomes]
rs11816767	0.90[AMR][1000 genomes]
rs11818136	0.90[AMR][1000 genomes]
rs11818645	0.82[EUR][1000 genomes]
rs11818842	1.00[EUR][1000 genomes]
rs11818993	0.90[AMR][1000 genomes]
rs11819631	0.81[AMR][1000 genomes]
rs12098587	0.90[AMR][1000 genomes]
rs12098618	0.90[AMR][1000 genomes]
rs12240963	0.90[AMR][1000 genomes]
rs12241350	0.90[AMR][1000 genomes]
rs12243607	0.90[AMR][1000 genomes]
rs12244182	0.81[AMR][1000 genomes]
rs12246088	0.90[AMR][1000 genomes]
rs12246158	0.90[AMR][1000 genomes]
rs12247183	0.90[AMR][1000 genomes]
rs12251155	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12251316	0.90[AMR][1000 genomes]
rs12253696	0.90[AMR][1000 genomes]
rs12257786	0.90[AMR][1000 genomes]
rs12259138	0.90[AMR][1000 genomes]
rs12259499	0.90[AMR][1000 genomes]
rs12261094	0.90[AMR][1000 genomes]
rs12261617	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12262674	0.90[AMR][1000 genomes]
rs12263872	0.81[AMR][1000 genomes]
rs12268796	0.90[AMR][1000 genomes]
rs1557163	0.90[AMR][1000 genomes]
rs1557164	0.90[AMR][1000 genomes]
rs1557165	0.90[AMR][1000 genomes]
rs1557166	0.90[AMR][1000 genomes]
rs16927640	0.90[AMR][1000 genomes]
rs16927646	0.90[AMR][1000 genomes]
rs2297148	0.81[AMR][1000 genomes]
rs34037342	0.90[AMR][1000 genomes]
rs34613194	0.90[AMR][1000 genomes]
rs34856168	0.90[AMR][1000 genomes]
rs41299210	0.82[EUR][1000 genomes]
rs57096075	0.90[AMR][1000 genomes]
rs57320669	1.00[AMR][1000 genomes]
rs57470366	0.90[AMR][1000 genomes]
rs57704178	0.90[AMR][1000 genomes]
rs58326983	0.90[AMR][1000 genomes]
rs58843203	0.90[AMR][1000 genomes]
rs59116633	0.90[AMR][1000 genomes]
rs59638069	0.90[AMR][1000 genomes]
rs61082197	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61125165	0.90[AMR][1000 genomes]
rs61686723	0.90[AMR][1000 genomes]
rs6482605	0.90[AMR][1000 genomes]
rs6482606	0.90[AMR][1000 genomes]
rs6482609	0.90[AMR][1000 genomes]
rs6482610	0.90[AMR][1000 genomes]
rs6482611	0.90[AMR][1000 genomes]
rs6482612	0.90[AMR][1000 genomes]
rs7068463	0.90[AMR][1000 genomes]
rs7072412	0.90[AMR][1000 genomes]
rs7074120	0.90[AMR][1000 genomes]
rs7084392	0.90[AMR][1000 genomes]
rs7084515	0.90[AMR][1000 genomes]
rs7085266	0.90[AMR][1000 genomes]
rs7090639	0.90[AMR][1000 genomes]
rs7358044	0.90[AMR][1000 genomes]
rs7358057	0.90[AMR][1000 genomes]
rs74126939	0.90[AMR][1000 genomes]
rs7900802	0.90[AMR][1000 genomes]
rs7902900	0.90[AMR][1000 genomes]
rs7906528	0.90[AMR][1000 genomes]
rs7907326	0.90[AMR][1000 genomes]
rs7908434	0.81[AMR][1000 genomes]
rs7909359	0.90[AMR][1000 genomes]
rs7910142	0.90[AMR][1000 genomes]
rs7920178	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7923708	0.90[AMR][1000 genomes]
rs7923846	0.90[AMR][1000 genomes]
rs9731310	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27441200-27446200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr10:27441200-27446200	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr10:27441200-27446200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:27441200-27446400	Active TSS	H1 Cell Line	embryonic stem cell
5	chr10:27441200-27446400	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr10:27441200-27446400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:27441600-27446200	Active TSS	H9 Cell Line	embryonic stem cell
8	chr10:27441800-27446000	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr10:27441800-27446200	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr10:27442000-27446000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:27442000-27446000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:27442000-27446000	Active TSS	Muscle Satellite Cultured Cells	--
13	chr10:27442000-27446000	Active TSS	NHDF-Ad	bronchial
14	chr10:27442000-27446200	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr10:27442000-27446200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:27442000-27446200	Active TSS	GM12878-XiMat	blood
17	chr10:27442000-27446200	Active TSS	Hela-S3	cervix
18	chr10:27442200-27446000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:27442200-27446000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:27442200-27446000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:27442200-27446000	Active TSS	Thymus	Thymus
22	chr10:27442200-27446000	Active TSS	HMEC	breast
23	chr10:27442200-27446000	Active TSS	K562	blood
24	chr10:27442200-27446000	Active TSS	NH-A	brain
25	chr10:27442200-27446000	Active TSS	Osteobl	bone
26	chr10:27442200-27446200	Active TSS	iPS-18 Cell Line	embryonic stem cell
27	chr10:27444800-27446400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:27445000-27447400	Enhancers	Stomach Mucosa	stomach
29	chr10:27445000-27454200	Weak transcription	Brain Substantia Nigra	brain
30	chr10:27445000-27486200	Weak transcription	Fetal Heart	heart
31	chr10:27445200-27447600	Weak transcription	Lung	lung
32	chr10:27445200-27453000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr10:27445200-27454200	Weak transcription	Ovary	ovary
34	chr10:27445200-27454400	Weak transcription	Gastric	stomach
35	chr10:27445400-27446000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:27445400-27446000	Flanking Active TSS	Dnd41	blood
37	chr10:27445400-27446200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr10:27445400-27446400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr10:27445400-27446400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr10:27445400-27446400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr10:27445400-27446400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:27445400-27446400	Enhancers	Fetal Brain Male	brain
43	chr10:27445400-27447200	Weak transcription	Colon Smooth Muscle	Colon
44	chr10:27445400-27447400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr10:27445400-27447600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr10:27445400-27447600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr10:27445400-27450600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr10:27445400-27450600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr10:27445400-27452600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr10:27445400-27452800	Weak transcription	Left Ventricle	heart

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