Variant report

Variant	rs61082197
Chromosome Location	chr10:27476576-27476577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27468624..27471267-chr10:27475372..27477159,2	K562	blood:
2	chr10:27475897..27479363-chr10:27528009..27531055,4	K562	blood:

Variant related genes	Relation type
ENSG00000107897	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs1002351	0.90[AMR][1000 genomes]
rs10159601	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10466100	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10764681	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10764682	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10829175	0.81[AMR][1000 genomes]
rs10829179	0.81[AMR][1000 genomes]
rs10829182	0.81[AMR][1000 genomes]
rs10829187	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10829189	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10829196	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10829198	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10829209	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10829214	0.90[AMR][1000 genomes]
rs10829215	0.90[AMR][1000 genomes]
rs10829216	0.90[AMR][1000 genomes]
rs11015513	1.00[AMR][1000 genomes]
rs11015524	0.81[AMR][1000 genomes]
rs11015544	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11015562	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11015584	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11015585	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11015602	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11015607	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11015608	0.80[EUR][1000 genomes]
rs11015609	0.80[EUR][1000 genomes]
rs11015610	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11015611	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11015612	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11015614	0.90[AMR][1000 genomes]
rs11015615	0.90[AMR][1000 genomes]
rs11813084	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11813101	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11813776	0.90[AMR][1000 genomes]
rs11815019	0.90[AMR][1000 genomes]
rs11816716	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11816764	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11816767	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11818136	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11818842	0.83[EUR][1000 genomes]
rs11818993	0.90[AMR][1000 genomes]
rs11819631	0.81[AMR][1000 genomes]
rs12098587	0.90[AMR][1000 genomes]
rs12098618	0.90[AMR][1000 genomes]
rs12240963	0.90[AMR][1000 genomes]
rs12241350	0.90[AMR][1000 genomes]
rs12243607	0.90[AMR][1000 genomes]
rs12244182	0.81[AMR][1000 genomes]
rs12246088	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12246158	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12247183	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12251155	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12251316	0.90[AMR][1000 genomes]
rs12253696	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12257786	0.90[AMR][1000 genomes]
rs12259138	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12259499	0.90[AMR][1000 genomes]
rs12261094	0.90[AMR][1000 genomes]
rs12261617	1.00[AMR][1000 genomes]
rs12262674	0.90[AMR][1000 genomes]
rs12263872	0.81[AMR][1000 genomes]
rs12268796	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1557163	0.90[AMR][1000 genomes]
rs1557164	0.90[AMR][1000 genomes]
rs1557165	0.90[AMR][1000 genomes]
rs1557166	0.90[AMR][1000 genomes]
rs16927640	0.90[AMR][1000 genomes]
rs16927646	0.90[AMR][1000 genomes]
rs2297148	0.81[AMR][1000 genomes]
rs34037342	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34613194	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34856168	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs57096075	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs57320669	1.00[AMR][1000 genomes]
rs57470366	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs57704178	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58326983	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58843203	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59116633	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59638069	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61125165	0.90[AMR][1000 genomes]
rs61686723	0.90[AMR][1000 genomes]
rs6482599	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6482605	0.90[AMR][1000 genomes]
rs6482606	0.90[AMR][1000 genomes]
rs6482609	0.90[AMR][1000 genomes]
rs6482610	0.90[AMR][1000 genomes]
rs6482611	0.90[AMR][1000 genomes]
rs6482612	0.90[AMR][1000 genomes]
rs7068463	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7072412	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7074120	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7084392	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7084515	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7085266	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7090639	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7358044	0.90[AMR][1000 genomes]
rs7358057	0.90[AMR][1000 genomes]
rs74126939	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7900802	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7902900	0.90[AMR][1000 genomes]
rs7903450	0.80[EUR][1000 genomes]
rs7906528	0.90[AMR][1000 genomes]
rs7907326	0.90[AMR][1000 genomes]
rs7908434	0.81[AMR][1000 genomes]
rs7909359	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7910142	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7920178	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7923708	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7923846	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9731310	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27445000-27486200	Weak transcription	Fetal Heart	heart
2	chr10:27445400-27490800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:27446400-27490800	Weak transcription	Fetal Brain Male	brain
4	chr10:27446400-27499200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:27446400-27508400	Weak transcription	Small Intestine	intestine
6	chr10:27446600-27477200	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:27447000-27476600	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:27447000-27477000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:27447000-27477800	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr10:27447200-27476600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:27447200-27478000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr10:27447200-27478200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:27447400-27476600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:27447400-27477200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:27447400-27478200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr10:27449600-27487200	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:27453000-27487000	Weak transcription	Spleen	Spleen
18	chr10:27454800-27481200	Weak transcription	Brain Substantia Nigra	brain
19	chr10:27454800-27487000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:27455000-27478400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:27455000-27494600	Weak transcription	Aorta	Aorta
22	chr10:27455000-27495200	Weak transcription	Right Ventricle	heart
23	chr10:27455400-27492200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr10:27455600-27494600	Weak transcription	Pancreas	Pancrea
25	chr10:27455800-27485200	Weak transcription	Colonic Mucosa	Colon
26	chr10:27456200-27484200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr10:27456200-27484800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr10:27456200-27490800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:27456200-27496800	Weak transcription	Esophagus	oesophagus
30	chr10:27456800-27487000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:27457400-27481400	Weak transcription	NHLF	lung
32	chr10:27457600-27485200	Weak transcription	Brain Angular Gyrus	brain
33	chr10:27459000-27484400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:27459200-27489800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr10:27459400-27478200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr10:27461800-27476600	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr10:27463400-27477000	Strong transcription	Placenta	Placenta
38	chr10:27464800-27492800	Weak transcription	HSMMtube	muscle
39	chr10:27466400-27478200	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr10:27466600-27481000	Weak transcription	NHDF-Ad	bronchial
41	chr10:27466600-27484600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr10:27466600-27484800	Weak transcription	Left Ventricle	heart
43	chr10:27466800-27485200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr10:27466800-27488400	Weak transcription	HepG2	liver
45	chr10:27467000-27485000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:27467200-27485000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr10:27468800-27476600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr10:27468800-27478200	Strong transcription	Liver	Liver
49	chr10:27469000-27476800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr10:27469000-27476800	Strong transcription	Fetal Thymus	thymus

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