Variant report

Variant	rs6785539
Chromosome Location	chr3:43257969-43257970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43233608..43236021-chr3:43256055..43258322,2	MCF-7	breast:
2	chr3:43235922..43238512-chr3:43256089..43258366,2	K562	blood:
3	chr3:43254448..43258211-chr3:43258239..43261327,4	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17075322	1.00[AMR][1000 genomes]
rs17075377	1.00[AMR][1000 genomes]
rs17075399	1.00[AMR][1000 genomes]
rs6766518	1.00[AMR][1000 genomes]
rs6774754	1.00[AMR][1000 genomes]
rs6774764	1.00[AMR][1000 genomes]
rs6778579	1.00[AMR][1000 genomes]
rs6782175	1.00[AMR][1000 genomes]
rs6785440	1.00[AMR][1000 genomes]
rs7609780	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3439212	chr3:43257514-43258236	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3413981	chr3:43257522-43258240	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43245000-43258800	Weak transcription	Right Atrium	heart
2	chr3:43247800-43259000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:43253200-43262400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:43253400-43259000	Weak transcription	Spleen	Spleen
5	chr3:43254000-43258000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:43256200-43266800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr3:43256200-43267000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr3:43256600-43260600	Weak transcription	Fetal Kidney	kidney
9	chr3:43256600-43264000	Enhancers	Primary T cells from cord blood	blood
10	chr3:43256800-43261000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr3:43256800-43264800	Enhancers	Fetal Thymus	thymus
12	chr3:43256800-43264800	Enhancers	Thymus	Thymus
13	chr3:43257000-43260400	Enhancers	NHEK	skin
14	chr3:43257000-43262400	Weak transcription	Fetal Intestine Small	intestine
15	chr3:43257200-43260400	Enhancers	Primary T cells fromperipheralblood	blood
16	chr3:43257200-43260400	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr3:43257200-43260600	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr3:43257200-43269400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:43257400-43266600	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr3:43257600-43258200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr3:43257800-43258600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr3:43257800-43259000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:43257800-43260000	Weak transcription	Left Ventricle	heart
24	chr3:43257800-43262600	Weak transcription	Pancreas	Pancrea

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