Variant report

Variant	rs6774754
Chromosome Location	chr3:43276502-43276503
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17075322	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075399	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6766518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6774764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6778579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6782175	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6785440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6785539	1.00[AMR][1000 genomes]
rs7609780	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7647760	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs925003	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6774754	ARMCX1	trans	lymphoblastoid	seeQTL
rs6774754	LYZL4	cis	lymphoblastoid	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43272800-43277400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:43273200-43277200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:43273600-43277200	Weak transcription	NHEK	skin
4	chr3:43273600-43277400	Weak transcription	HMEC	breast
5	chr3:43273600-43277800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:43275200-43276600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:43276000-43276600	Enhancers	NHLF	lung
8	chr3:43276000-43278200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:43276200-43277000	Enhancers	HUVEC	blood vessel
10	chr3:43276200-43278000	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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