The 2.0 version of rSNPBase

Variant report

Variant rs925003
Chromosome Location chr3:43448810-43448811
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:43421400-43454800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr3:43430000-43449400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
3 chr3:43430000-43460200 Weak transcription Aorta Aorta
4 chr3:43432000-43450800 Weak transcription Esophagus oesophagus
5 chr3:43432000-43453600 Weak transcription Gastric stomach
6 chr3:43432000-43460200 Weak transcription Rectal Smooth Muscle rectum
7 chr3:43432000-43477800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
8 chr3:43432200-43453800 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr3:43432400-43453800 Weak transcription Primary T cells from cord blood blood
10 chr3:43433400-43458800 Weak transcription Pancreas Pancrea
11 chr3:43436400-43450600 Weak transcription Placenta Placenta
12 chr3:43436400-43452200 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr3:43436400-43475800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr3:43440800-43464400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
15 chr3:43441000-43453800 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr3:43442000-43450800 Weak transcription Ovary ovary
17 chr3:43442000-43455200 Weak transcription Right Ventricle heart
18 chr3:43442200-43455200 Weak transcription Fetal Stomach stomach
19 chr3:43442400-43460200 Weak transcription Fetal Muscle Leg muscle
20 chr3:43442600-43460200 Weak transcription Adipose Nuclei Adipose
21 chr3:43443000-43495600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr3:43443400-43465800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr3:43446800-43449000 Enhancers Primary hematopoietic stem cells blood
24 chr3:43446800-43449200 Enhancers Primary hematopoietic stem cells short term culture blood
25 chr3:43447000-43449000 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
26 chr3:43447000-43452400 Weak transcription Colon Smooth Muscle Colon
27 chr3:43447000-43465800 Weak transcription Monocytes-CD14+_RO01746 blood
28 chr3:43447600-43451000 Strong transcription Duodenum Mucosa Duodenum
29 chr3:43447800-43449200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr3:43447800-43450200 Weak transcription Right Atrium heart
31 chr3:43447800-43452600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr3:43447800-43453000 Weak transcription H9 Cell Line embryonic stem cell
33 chr3:43447800-43460400 Weak transcription Left Ventricle heart
34 chr3:43447800-43481200 Weak transcription Lung lung
35 chr3:43448000-43449400 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr3:43448000-43453000 Weak transcription Fetal Brain Female brain
37 chr3:43448000-43453000 Weak transcription HUVEC blood vessel
38 chr3:43448200-43449000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr3:43448200-43449000 Enhancers Skeletal Muscle Female skeletal muscle
40 chr3:43448200-43449400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr3:43448200-43454600 Weak transcription Fetal Adrenal Gland Adrenal Gland
42 chr3:43448200-43464800 Weak transcription Muscle Satellite Cultured Cells --
43 chr3:43448200-43464800 Weak transcription Osteobl bone
44 chr3:43448400-43449400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr3:43448400-43450600 Weak transcription Fetal Lung lung
46 chr3:43448400-43451200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr3:43448400-43460200 Weak transcription HSMM muscle
48 chr3:43448600-43449000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr3:43448600-43449000 Strong transcription Fetal Intestine Small intestine
50 chr3:43448600-43449200 Enhancers NHEK skin

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Last update: Aug 31, 2015