Variant report

Variant	rs6786290
Chromosome Location	chr3:133470146-133470147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4854759	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177190	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177201	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177205	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177222	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177225	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880615	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv877507	chr3:133465201-133473516	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133465600-133483000	Weak transcription	Brain Germinal Matrix	brain
2	chr3:133466800-133476800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:133469400-133471600	Weak transcription	Brain Angular Gyrus	brain
4	chr3:133469400-133472000	Weak transcription	Esophagus	oesophagus
5	chr3:133469400-133473200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:133469600-133471000	Enhancers	Liver	Liver
7	chr3:133469600-133471200	Enhancers	Brain Hippocampus Middle	brain
8	chr3:133469600-133471400	Weak transcription	Brain Anterior Caudate	brain
9	chr3:133469600-133471400	Weak transcription	Brain Substantia Nigra	brain
10	chr3:133469600-133471600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:133469600-133471800	Weak transcription	Pancreas	Pancrea
12	chr3:133469600-133472000	Weak transcription	K562	blood
13	chr3:133469600-133473000	Weak transcription	NHEK	skin
14	chr3:133469600-133473400	Weak transcription	Adipose Nuclei	Adipose
15	chr3:133469600-133473800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:133469600-133474400	Weak transcription	Fetal Intestine Small	intestine
17	chr3:133469600-133476400	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:133470000-133471000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:133470000-133471600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:133470000-133472200	Genic enhancers	HepG2	liver

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