Variant report

Variant	rs8177190
Chromosome Location	chr3:133467696-133467697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs4854759	0.93[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6786290	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177201	0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];0.87[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177205	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177222	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177225	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177277	1.00[ASW][hapmap];1.00[CHB][hapmap]
rs9824452	1.00[CHB][hapmap];0.85[GIH][hapmap]
rs9853123	1.00[CHB][hapmap]
rs9880615	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv877507	chr3:133465201-133473516	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133464800-133468200	Active TSS	Brain Cingulate Gyrus	brain
2	chr3:133464800-133468400	Active TSS	Brain Angular Gyrus	brain
3	chr3:133465000-133468200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:133465000-133468400	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr3:133465400-133468400	Weak transcription	Esophagus	oesophagus
6	chr3:133465600-133483000	Weak transcription	Brain Germinal Matrix	brain
7	chr3:133465800-133469000	Weak transcription	Pancreas	Pancrea
8	chr3:133465800-133470000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:133466200-133468200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:133466800-133476800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:133467000-133469400	Transcr. at gene 5' and 3'	Liver	Liver
12	chr3:133467000-133470000	Transcr. at gene 5' and 3'	HepG2	liver
13	chr3:133467200-133468800	Weak transcription	Adipose Nuclei	Adipose
14	chr3:133467400-133468000	Active TSS	Brain Substantia Nigra	brain
15	chr3:133467400-133468600	Active TSS	Brain Hippocampus Middle	brain
16	chr3:133467400-133468800	Active TSS	Brain Anterior Caudate	brain
17	chr3:133467600-133469600	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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