Variant report

Variant	rs9853123
Chromosome Location	chr3:133532782-133532783
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133527146..133529319-chr3:133531508..133533249,2	K562	blood:
2	chr3:133523871..133525894-chr3:133531405..133534364,2	K562	blood:
3	chr3:133525851..133529279-chr3:133530851..133534127,4	MCF-7	breast:
4	chr3:133531479..133533373-chr3:133538072..133539757,2	MCF-7	breast:
5	chr3:133522634..133526763-chr3:133529104..133532905,8	K562	blood:

Variant related genes	Relation type
ENSG00000144867	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13321671	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4428180	0.85[CEU][hapmap]
rs4854759	1.00[CHB][hapmap]
rs8177190	1.00[CHB][hapmap]
rs8177201	1.00[CHB][hapmap]
rs8177277	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9824452	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9880615	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133525400-133532800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:133525400-133532800	Weak transcription	Esophagus	oesophagus
3	chr3:133525400-133533600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:133525400-133533600	Weak transcription	Spleen	Spleen
5	chr3:133525400-133539000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:133525600-133532800	Weak transcription	Ovary	ovary
7	chr3:133525600-133533600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr3:133525600-133533600	Weak transcription	Pancreas	Pancrea
9	chr3:133525600-133533800	Weak transcription	Fetal Kidney	kidney
10	chr3:133525600-133533800	Weak transcription	Psoas Muscle	Psoas
11	chr3:133525600-133534200	Weak transcription	Right Ventricle	heart
12	chr3:133525600-133534400	Weak transcription	Brain Substantia Nigra	brain
13	chr3:133525600-133538400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:133525600-133539000	Weak transcription	Gastric	stomach
15	chr3:133525600-133539200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:133525600-133541000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr3:133525800-133533600	Weak transcription	Brain Hippocampus Middle	brain
18	chr3:133525800-133534000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr3:133525800-133536400	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:133525800-133538800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr3:133525800-133538800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr3:133525800-133538800	Weak transcription	Stomach Mucosa	stomach
23	chr3:133525800-133541000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr3:133526200-133537400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:133526200-133540600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:133526200-133543400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:133526400-133536800	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:133526400-133537200	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr3:133526400-133537400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr3:133526400-133540200	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr3:133526400-133543800	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr3:133526400-133544000	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr3:133526400-133544000	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr3:133526600-133536200	Strong transcription	HSMM	muscle
35	chr3:133526600-133536800	Strong transcription	Fetal Muscle Leg	muscle
36	chr3:133526600-133537000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:133526600-133537000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr3:133526600-133537000	Strong transcription	Placenta	Placenta
39	chr3:133526600-133537200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr3:133526600-133537600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr3:133526600-133538000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:133526600-133539800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr3:133526600-133539800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr3:133526600-133543400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr3:133526600-133544800	Strong transcription	Primary B cells from peripheral blood	blood
46	chr3:133526600-133544800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr3:133526800-133536600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr3:133526800-133537200	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr3:133526800-133537200	Strong transcription	HUVEC	blood vessel
50	chr3:133526800-133537600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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