Variant report

Variant	rs6786527
Chromosome Location	chr3:150691398-150691399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16863137	1.00[EUR][1000 genomes]
rs56218140	1.00[EUR][1000 genomes]
rs57319865	1.00[EUR][1000 genomes]
rs57881928	1.00[EUR][1000 genomes]
rs61112399	1.00[EUR][1000 genomes]
rs73011152	1.00[EUR][1000 genomes]
rs73011164	1.00[EUR][1000 genomes]
rs73011173	1.00[EUR][1000 genomes]
rs73869119	1.00[EUR][1000 genomes]
rs7629984	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150689800-150691800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:150690000-150694600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:150690400-150693200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:150690400-150694000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:150690600-150691600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:150690600-150692800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:150690600-150692800	Enhancers	Fetal Intestine Large	intestine
8	chr3:150690600-150693400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:150690800-150692000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:150690800-150692200	Enhancers	Fetal Intestine Small	intestine
11	chr3:150690800-150693600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:150690800-150693600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:150691000-150691400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr3:150691000-150691600	Enhancers	Duodenum Mucosa	Duodenum
15	chr3:150691000-150692000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:150691000-150693000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr3:150691000-150693000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr3:150691000-150693200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr3:150691000-150693400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr3:150691000-150693400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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