Variant report

Variant	rs7629984
Chromosome Location	chr3:150760636-150760637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16863137	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56121010	0.81[AFR][1000 genomes]
rs56218140	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57319865	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57881928	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61112399	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6786527	1.00[EUR][1000 genomes]
rs73011152	1.00[EUR][1000 genomes]
rs73011164	1.00[EUR][1000 genomes]
rs73011173	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73012964	0.83[AFR][1000 genomes]
rs73869114	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73869119	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150756000-150761000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:150756200-150761000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:150756200-150761000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:150756200-150761000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:150756200-150761200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:150756200-150761200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:150756600-150761200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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