Variant report

Variant	rs67874253
Chromosome Location	chr18:29748189-29748190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10502583	0.86[EUR][1000 genomes]
rs11873351	0.81[EUR][1000 genomes]
rs12327133	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12327134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2000669	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71361368	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7233250	0.84[EUR][1000 genomes]
rs8093507	0.82[EUR][1000 genomes]
rs9952201	0.88[EUR][1000 genomes]
rs9963287	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29747200-29748400	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr18:29747600-29748200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:29748000-29748600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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