Variant report

Variant	rs9952201
Chromosome Location	chr18:29754749-29754750
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10502583	0.87[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11873351	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12327133	0.90[EUR][1000 genomes]
rs12327134	0.88[EUR][1000 genomes]
rs2000669	0.90[EUR][1000 genomes]
rs66693026	0.80[EUR][1000 genomes]
rs67874253	0.88[EUR][1000 genomes]
rs71361368	0.90[EUR][1000 genomes]
rs9954856	0.87[EUR][1000 genomes]
rs9961114	0.85[MKK][hapmap]
rs9963287	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29754000-29755200	Enhancers	Fetal Brain Male	brain
2	chr18:29754600-29754800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr18:29754600-29755000	Enhancers	Fetal Muscle Trunk	muscle
4	chr18:29754600-29755600	Enhancers	Fetal Muscle Leg	muscle
5	chr18:29754600-29755600	Enhancers	Left Ventricle	heart
6	chr18:29754600-29755800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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