The 2.0 version of rSNPBase
Home
Search
Document
What's New
Tutorial
Data Content
Download
Feedback
About Us
Variant report
Variant
rs9961114
Chromosome Location
chr18:29766033-29766034
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
No data
No data
No data
No data
Extended variants information (count: 6 )
Associated traits (count: 1 )
rSNPs within LD-proxies of this variant (count:5)
rs_ID
r
2
[population]
rs60487427
0.91[ASN][1000 genomes]
rs62095606
0.94[ASN][1000 genomes]
rs62095607
0.94[ASN][1000 genomes]
rs9952201
0.85[MKK][hapmap]
rs9960741
0.81[GIH][hapmap];0.87[EUR][1000 genomes]
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv1056007
chr18:29711974-29899564
Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site
10 gene(s)
inside rSNPs
diseases
mRNA abundance (count:1)
SNP
Gene
Cis/trans
Tissue
Source
rs9961114
TTR
cis
parietal
SCAN
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links