Variant report

Variant	rs9954856
Chromosome Location	chr18:29755144-29755145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2289543	0.87[JPT][hapmap]
rs2289544	0.87[JPT][hapmap]
rs5009126	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs7232848	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7233250	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7244700	0.93[ASN][1000 genomes]
rs73417842	0.94[ASN][1000 genomes]
rs8093507	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9945133	0.83[JPT][hapmap]
rs9947993	0.83[AFR][1000 genomes]
rs9952201	0.87[EUR][1000 genomes]
rs9960741	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs9963287	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9954856	C18orf34	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29754000-29755200	Enhancers	Fetal Brain Male	brain
2	chr18:29754600-29755600	Enhancers	Fetal Muscle Leg	muscle
3	chr18:29754600-29755600	Enhancers	Left Ventricle	heart
4	chr18:29754600-29755800	Enhancers	Fetal Lung	lung
5	chr18:29754800-29755600	Enhancers	Adipose Nuclei	Adipose
6	chr18:29754800-29758200	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr18:29755000-29756000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr18:29755000-29756200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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