Variant report

Variant	rs6787870
Chromosome Location	chr3:111363310-111363311
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11914473	0.98[ASN][1000 genomes]
rs1513328	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16858329	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2895386	0.97[ASN][1000 genomes]
rs3733176	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56172864	0.98[ASN][1000 genomes]
rs56306480	0.98[ASN][1000 genomes]
rs57067927	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57501419	0.96[ASN][1000 genomes]
rs57831621	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6763322	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6765832	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6768092	0.98[ASN][1000 genomes]
rs6770144	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6770679	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6771309	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6780210	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6780729	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6801876	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73230132	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73230143	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73852844	0.98[ASN][1000 genomes]
rs73852849	0.98[ASN][1000 genomes]
rs7431849	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7637536	0.86[ASN][1000 genomes]
rs9819529	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9858544	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111347000-111367200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:111347600-111367800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:111357000-111368800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr3:111358400-111366800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr3:111358400-111369400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:111358600-111367000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr3:111358800-111365600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr3:111358800-111367000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr3:111358800-111368600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:111358800-111368600	Weak transcription	Thymus	Thymus
11	chr3:111359000-111366000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:111359000-111366200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr3:111359000-111368200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr3:111359200-111364600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr3:111359200-111368400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:111361600-111366200	Weak transcription	Fetal Thymus	thymus
17	chr3:111362400-111366800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr3:111362600-111364600	Weak transcription	Dnd41	blood
19	chr3:111363200-111374600	Strong transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links