Variant report

Variant	rs7637536
Chromosome Location	chr3:111382682-111382683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11914473	0.88[ASN][1000 genomes]
rs1513328	0.85[ASN][1000 genomes]
rs1513330	0.88[AMR][1000 genomes]
rs16858329	0.82[ASN][1000 genomes]
rs2895386	0.87[ASN][1000 genomes]
rs3733176	0.88[ASN][1000 genomes]
rs4428148	0.88[AMR][1000 genomes]
rs56172864	0.88[ASN][1000 genomes]
rs56306480	0.88[ASN][1000 genomes]
rs57067927	0.88[ASN][1000 genomes]
rs57501419	0.86[ASN][1000 genomes]
rs57831621	0.88[ASN][1000 genomes]
rs6763322	0.88[ASN][1000 genomes]
rs6765832	0.86[ASN][1000 genomes]
rs6768092	0.88[ASN][1000 genomes]
rs6770144	0.88[ASN][1000 genomes]
rs6770679	0.88[ASN][1000 genomes]
rs6771309	0.88[ASN][1000 genomes]
rs6780210	0.88[ASN][1000 genomes]
rs6780729	0.86[ASN][1000 genomes]
rs6787870	0.86[ASN][1000 genomes]
rs6801876	0.88[ASN][1000 genomes]
rs6807632	0.88[AMR][1000 genomes]
rs73230132	0.88[ASN][1000 genomes]
rs73230143	0.88[ASN][1000 genomes]
rs73852844	0.88[ASN][1000 genomes]
rs73852849	0.88[ASN][1000 genomes]
rs7431849	0.82[ASN][1000 genomes]
rs7639907	0.88[AMR][1000 genomes]
rs9819529	0.87[ASN][1000 genomes]
rs9858544	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111374000-111385200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:111381000-111385800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr3:111381200-111383000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr3:111381200-111383400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:111381200-111384600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:111381200-111384600	Weak transcription	Fetal Thymus	thymus
7	chr3:111381200-111385600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:111381200-111386000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr3:111381200-111386000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr3:111381600-111384200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:111381800-111383400	Strong transcription	Dnd41	blood
12	chr3:111381800-111384400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr3:111382000-111383200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
14	chr3:111382200-111384600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr3:111382200-111385800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:111382400-111383000	Weak transcription	Primary T cells from cord blood	blood
17	chr3:111382400-111383200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
18	chr3:111382400-111385800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr3:111382600-111383000	Weak transcription	Primary T helper cells fromperipheralblood	blood

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