Variant report

Variant	rs67879380
Chromosome Location	chr11:93460160-93460161
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:93459822..93462778-chr11:93509047..93511510,2	K562	blood:
2	chr11:93459100..93466497-chr11:93514555..93520746,14	K562	blood:
3	chr11:93458749..93462343-chr11:93515783..93520848,6	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TAF1D-1	chr11:93459820-93462971	NONHSAT023660

Variant related genes	Relation type
ENSG00000042429	Chromatin interaction
ENSG00000166012	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11822585	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1807990	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2077408	0.88[ASN][1000 genomes]
rs58172303	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58671261	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59031514	0.90[ASN][1000 genomes]
rs61743303	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66460850	0.90[ASN][1000 genomes]
rs67112133	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67182840	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67257421	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67310816	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67437695	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67749053	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67769616	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109236	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7115759	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72643380	0.94[ASN][1000 genomes]
rs7930516	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7937500	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7939577	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv832232	chr11:93401314-93549438	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93427000-93465800	Strong transcription	Hela-S3	cervix
2	chr11:93430800-93465400	Weak transcription	Stomach Mucosa	stomach
3	chr11:93441600-93461200	Weak transcription	HSMMtube	muscle
4	chr11:93442000-93463200	Weak transcription	Colonic Mucosa	Colon
5	chr11:93443600-93460200	Weak transcription	NHDF-Ad	bronchial
6	chr11:93444000-93466400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:93444200-93462200	Weak transcription	Psoas Muscle	Psoas
8	chr11:93444800-93471000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:93445400-93465200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:93447600-93468000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:93448000-93465600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:93448600-93461400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:93448600-93465400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:93449000-93462200	Weak transcription	Small Intestine	intestine
15	chr11:93449200-93462400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:93449200-93471800	Weak transcription	Right Atrium	heart
17	chr11:93449400-93461600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:93449400-93463800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:93449400-93465400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:93449600-93462200	Weak transcription	Spleen	Spleen
21	chr11:93449600-93462400	Weak transcription	Right Ventricle	heart
22	chr11:93449600-93471800	Weak transcription	Esophagus	oesophagus
23	chr11:93450000-93462200	Weak transcription	Pancreas	Pancrea
24	chr11:93450200-93461000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:93450200-93461600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:93450600-93471800	Weak transcription	Gastric	stomach
27	chr11:93450600-93473000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:93451600-93469800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:93451600-93470800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr11:93451800-93461800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr11:93451800-93462000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr11:93451800-93466800	Strong transcription	Dnd41	blood
33	chr11:93452000-93460800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr11:93452000-93461600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr11:93452000-93462000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr11:93453200-93468000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr11:93453400-93465200	Strong transcription	Duodenum Mucosa	Duodenum
38	chr11:93453600-93468000	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr11:93453800-93465200	Strong transcription	Fetal Intestine Large	intestine
40	chr11:93453800-93471200	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr11:93453800-93471800	Strong transcription	Fetal Muscle Leg	muscle
42	chr11:93453800-93471800	Strong transcription	Fetal Thymus	thymus
43	chr11:93453800-93472400	Strong transcription	Fetal Muscle Trunk	muscle
44	chr11:93454000-93470400	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr11:93454200-93467000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr11:93454400-93467800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:93454400-93469000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:93454400-93469400	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr11:93454400-93469600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr11:93454400-93469800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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