Variant report

Variant	rs6789174
Chromosome Location	chr3:61223457-61223458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:61222187..61223963-chr3:61225868..61228655,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11920071	1.00[EUR][1000 genomes]
rs11924124	0.83[AMR][1000 genomes]
rs11925562	1.00[EUR][1000 genomes]
rs1453740	1.00[EUR][1000 genomes]
rs17064510	1.00[EUR][1000 genomes]
rs1880214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55981089	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56665745	1.00[EUR][1000 genomes]
rs61461958	1.00[EUR][1000 genomes]
rs61530280	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73837547	1.00[EUR][1000 genomes]
rs73839928	1.00[EUR][1000 genomes]
rs9873312	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876866	chr3:61054494-61310328	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876867	chr3:61054494-61474575	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv432423	chr3:61100255-61606060	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1000378	chr3:61103229-61238089	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv876868	chr3:61145050-61282503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv532626	chr3:61159646-61388418	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1008399	chr3:61176965-61461349	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61203400-61225600	Weak transcription	Lung	lung
2	chr3:61203400-61225600	Weak transcription	Pancreas	Pancrea
3	chr3:61208000-61225600	Weak transcription	Right Atrium	heart
4	chr3:61220000-61230000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:61220200-61225600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:61221000-61225600	Weak transcription	Right Ventricle	heart
7	chr3:61222200-61224000	Enhancers	K562	blood
8	chr3:61222400-61225600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:61222600-61223800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:61222600-61224000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:61222600-61224800	Weak transcription	Psoas Muscle	Psoas
12	chr3:61222600-61225600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:61222600-61225600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:61222600-61225600	Weak transcription	Left Ventricle	heart
15	chr3:61222600-61225600	Weak transcription	Spleen	Spleen
16	chr3:61222600-61225800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:61222600-61225800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr3:61222600-61226600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr3:61222600-61228000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:61222600-61232800	Weak transcription	Brain Angular Gyrus	brain
21	chr3:61222800-61224800	Enhancers	GM12878-XiMat	blood
22	chr3:61223000-61225600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr3:61223200-61223600	Enhancers	Brain Anterior Caudate	brain
24	chr3:61223200-61225000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr3:61223400-61223600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr3:61223400-61223600	Enhancers	Ovary	ovary
27	chr3:61223400-61224200	Weak transcription	Brain Substantia Nigra	brain
28	chr3:61223400-61226200	Enhancers	Brain Hippocampus Middle	brain

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