Variant report

Variant	rs73837547
Chromosome Location	chr3:61416198-61416199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11920071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11925562	1.00[EUR][1000 genomes]
rs1453740	1.00[EUR][1000 genomes]
rs1880214	1.00[EUR][1000 genomes]
rs55981089	1.00[EUR][1000 genomes]
rs56665745	1.00[EUR][1000 genomes]
rs61461958	1.00[EUR][1000 genomes]
rs61530280	1.00[EUR][1000 genomes]
rs6789174	1.00[EUR][1000 genomes]
rs9873312	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876867	chr3:61054494-61474575	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv432423	chr3:61100255-61606060	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1008399	chr3:61176965-61461349	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv876869	chr3:61357417-61444443	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv834711	chr3:61413762-61612539	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	esv3463356	chr3:61415914-61416898	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
7	esv3463357	chr3:61415914-61416898	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
8	esv15246	chr3:61416147-61416873	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
9	nsv590427	chr3:61416169-61416671	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
10	nsv590428	chr3:61416169-61416725	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
11	nsv590429	chr3:61416169-61416776	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
12	nsv590430	chr3:61416169-61416833	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
13	nsv590431	chr3:61416169-61418941	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
14	nsv590432	chr3:61416169-61425165	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61411200-61416400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:61416000-61416200	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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