Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:34238738..34241610-chr3:34244230..34246747,2	K562	blood:

Variant related genes	Relation type
ENSG00000236452	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10510658	1.00[ASN][1000 genomes]
rs11129588	1.00[ASN][1000 genomes]
rs11129590	1.00[ASN][1000 genomes]
rs11708781	1.00[ASN][1000 genomes]
rs11710773	1.00[ASN][1000 genomes]
rs11714874	1.00[ASN][1000 genomes]
rs11717932	1.00[ASN][1000 genomes]
rs11927616	1.00[ASN][1000 genomes]
rs11927965	1.00[ASN][1000 genomes]
rs13063086	1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[ASN][1000 genomes]
rs13065915	1.00[ASN][1000 genomes]
rs13083357	1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[ASN][1000 genomes]
rs1866754	1.00[ASN][1000 genomes]
rs1960959	1.00[ASN][1000 genomes]
rs62248462	1.00[ASN][1000 genomes]
rs66558495	1.00[ASN][1000 genomes]
rs7612155	1.00[ASN][1000 genomes]
rs7621412	1.00[CHB][hapmap]
rs7626572	1.00[ASN][1000 genomes]
rs7627333	1.00[ASN][1000 genomes]
rs968102	1.00[ASN][1000 genomes]
rs968103	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34238000-34242400	Enhancers	Primary B cells from peripheral blood	blood
2	chr3:34239000-34242400	Enhancers	Primary B cells from cord blood	blood
3	chr3:34240200-34242400	Weak transcription	Thymus	Thymus
4	chr3:34240400-34241600	Weak transcription	GM12878-XiMat	blood
5	chr3:34240600-34241600	Weak transcription	Dnd41	blood
6	chr3:34240800-34241800	Weak transcription	Fetal Thymus	thymus

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