Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10510658	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11129588	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11129590	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708781	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710773	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714874	1.00[ASN][1000 genomes]
rs11717932	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11927616	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11927965	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13063086	0.88[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13065915	1.00[ASN][1000 genomes]
rs13083357	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1866754	1.00[ASN][1000 genomes]
rs1960959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62248462	1.00[ASN][1000 genomes]
rs66558495	1.00[ASN][1000 genomes]
rs6789334	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7621412	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs7626572	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627333	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs968102	1.00[ASN][1000 genomes]
rs968103	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7612155	AC123023.1	cis	lung	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34215600-34217800	Enhancers	Dnd41	blood
2	chr3:34216000-34217800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:34216200-34217400	Enhancers	Fetal Thymus	thymus
4	chr3:34216200-34217600	Enhancers	Thymus	Thymus
5	chr3:34216200-34217800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:34216200-34217800	Enhancers	Fetal Intestine Small	intestine
7	chr3:34216200-34218600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr3:34216400-34217400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:34216600-34217800	Enhancers	Duodenum Mucosa	Duodenum
10	chr3:34216600-34217800	Enhancers	Fetal Intestine Large	intestine
11	chr3:34216600-34218400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr3:34216800-34217800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr3:34216800-34218400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:34216800-34218800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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