Variant report

Variant	rs6789735
Chromosome Location	chr3:23866507-23866508
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:23860207..23865148-chr3:23865238..23868314,5	MCF-7	breast:
2	chr3:23865397..23867553-chr3:23985591..23988399,2	MCF-7	breast:
3	chr3:23865331..23867821-chr3:23885658..23888275,2	K562	blood:
4	chr3:23865377..23868254-chr3:23870835..23872991,2	K562	blood:
5	chr3:23849205..23854945-chr3:23862070..23869570,11	MCF-7	breast:
6	chr3:23846430..23848847-chr3:23864562..23867377,2	MCF-7	breast:
7	chr3:23846519..23848601-chr3:23864927..23866967,3	K562	blood:
8	chr3:23865164..23867639-chr3:23868345..23870545,3	K562	blood:
9	chr3:23849520..23854083-chr3:23862798..23866767,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000174738	Chromatin interaction
ENSG00000197885	Chromatin interaction
ENSG00000223791	Chromatin interaction
ENSG00000170142	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1026407	0.91[EUR][1000 genomes]
rs11707828	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1471060	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1473380	0.97[EUR][1000 genomes]
rs1473381	0.98[EUR][1000 genomes]
rs4858092	0.90[EUR][1000 genomes]
rs4858548	0.93[EUR][1000 genomes]
rs4858549	0.92[EUR][1000 genomes]
rs6550804	0.93[EUR][1000 genomes]
rs6771166	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6784101	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6794905	0.81[EUR][1000 genomes]
rs7615640	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9830778	0.97[EUR][1000 genomes]
rs9869299	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834637	chr3:23703928-23886144	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23853000-23867200	Weak transcription	Aorta	Aorta
2	chr3:23853000-23867800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:23853000-23867800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr3:23853000-23867800	Weak transcription	Esophagus	oesophagus
5	chr3:23853000-23867800	Weak transcription	Fetal Brain Female	brain
6	chr3:23853000-23867800	Weak transcription	Right Atrium	heart
7	chr3:23853000-23868000	Weak transcription	NH-A	brain
8	chr3:23853000-23868400	Weak transcription	HSMMtube	muscle
9	chr3:23853000-23876000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:23853000-23876000	Weak transcription	Fetal Stomach	stomach
11	chr3:23853000-23882000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:23853000-23887400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:23853200-23893200	Weak transcription	Thymus	Thymus
14	chr3:23853400-23867400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr3:23853400-23885600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr3:23854000-23867400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:23854200-23870000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr3:23854200-23871400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr3:23854400-23867800	Weak transcription	Fetal Kidney	kidney
20	chr3:23854400-23876800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr3:23854600-23866600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:23854600-23871000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr3:23854600-23871200	Weak transcription	Fetal Brain Male	brain
24	chr3:23854800-23866600	Weak transcription	HepG2	liver
25	chr3:23854800-23871000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr3:23855000-23869600	Weak transcription	Dnd41	blood
27	chr3:23855000-23900200	Weak transcription	HSMM	muscle
28	chr3:23856400-23867800	Weak transcription	Hela-S3	cervix
29	chr3:23857600-23866600	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr3:23857600-23870800	Weak transcription	Small Intestine	intestine
31	chr3:23857600-23894000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:23857600-23900000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr3:23859000-23866600	Weak transcription	Lung	lung
34	chr3:23860200-23866600	Weak transcription	Pancreas	Pancrea
35	chr3:23861000-23868800	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr3:23861800-23867200	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr3:23861800-23867600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr3:23861800-23867800	Weak transcription	Osteobl	bone
39	chr3:23861800-23868400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr3:23861800-23871000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:23862000-23866600	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr3:23862000-23871000	Weak transcription	Fetal Muscle Leg	muscle
43	chr3:23862000-23876400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:23862000-23881400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr3:23862000-23882000	Weak transcription	Fetal Intestine Large	intestine
46	chr3:23862200-23867800	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr3:23862400-23867800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:23862400-23867800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr3:23862600-23867600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr3:23862600-23867600	Weak transcription	NHDF-Ad	bronchial

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