Variant report

Variant	rs7615640
Chromosome Location	chr3:23857931-23857932
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1026407	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11707828	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1471060	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1473380	0.86[EUR][1000 genomes]
rs1473381	0.87[EUR][1000 genomes]
rs1966895	0.82[EUR][1000 genomes]
rs4858092	0.96[EUR][1000 genomes]
rs4858548	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4858549	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6550804	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6771166	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6778155	0.82[EUR][1000 genomes]
rs6784101	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6789735	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6794905	0.87[EUR][1000 genomes]
rs9830778	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834637	chr3:23703928-23886144	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23852800-23859600	Weak transcription	Gastric	stomach
2	chr3:23853000-23858000	Weak transcription	Lung	lung
3	chr3:23853000-23859000	Weak transcription	Placenta	Placenta
4	chr3:23853000-23860000	Weak transcription	Pancreas	Pancrea
5	chr3:23853000-23860800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:23853000-23861000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:23853000-23861200	Weak transcription	Left Ventricle	heart
8	chr3:23853000-23861400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:23853000-23862400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:23853000-23862600	Weak transcription	Ovary	ovary
11	chr3:23853000-23862800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:23853000-23865800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:23853000-23866200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr3:23853000-23867200	Weak transcription	Aorta	Aorta
15	chr3:23853000-23867800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:23853000-23867800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr3:23853000-23867800	Weak transcription	Esophagus	oesophagus
18	chr3:23853000-23867800	Weak transcription	Fetal Brain Female	brain
19	chr3:23853000-23867800	Weak transcription	Right Atrium	heart
20	chr3:23853000-23868000	Weak transcription	NH-A	brain
21	chr3:23853000-23868400	Weak transcription	HSMMtube	muscle
22	chr3:23853000-23876000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:23853000-23876000	Weak transcription	Fetal Stomach	stomach
24	chr3:23853000-23882000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr3:23853000-23887400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr3:23853200-23858400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:23853200-23859400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr3:23853200-23861000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:23853200-23861000	Weak transcription	Brain Germinal Matrix	brain
30	chr3:23853200-23861200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr3:23853200-23861200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr3:23853200-23893200	Weak transcription	Thymus	Thymus
33	chr3:23853400-23859600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr3:23853400-23864400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr3:23853400-23866000	Weak transcription	HMEC	breast
36	chr3:23853400-23867400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr3:23853400-23885600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr3:23853600-23861200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr3:23853600-23866000	Weak transcription	Liver	Liver
40	chr3:23853800-23858000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr3:23853800-23860800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr3:23853800-23860800	Weak transcription	Primary B cells from cord blood	blood
43	chr3:23853800-23861000	Weak transcription	Brain Anterior Caudate	brain
44	chr3:23853800-23865200	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr3:23854000-23858400	Strong transcription	A549	lung
46	chr3:23854000-23860200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr3:23854000-23867400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr3:23854200-23861200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr3:23854200-23870000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr3:23854200-23871400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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