Variant report

Variant	rs6790259
Chromosome Location	chr3:158143080-158143081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13317509	0.90[AFR][1000 genomes]
rs28402668	0.87[AFR][1000 genomes]
rs6441190	0.91[AFR][1000 genomes]
rs6441192	0.88[AFR][1000 genomes]
rs6767072	1.00[AFR][1000 genomes]
rs6775960	0.83[AFR][1000 genomes]
rs6776674	0.90[AFR][1000 genomes]
rs6787212	0.90[AFR][1000 genomes]
rs6810324	0.83[AFR][1000 genomes]
rs73028775	1.00[AFR][1000 genomes]
rs73030514	0.82[AFR][1000 genomes]
rs7618252	0.82[AFR][1000 genomes]
rs7627082	0.90[AFR][1000 genomes]
rs7635356	0.98[AFR][1000 genomes]
rs9821945	0.92[AFR][1000 genomes]
rs9829790	0.92[AFR][1000 genomes]
rs9843252	0.94[AFR][1000 genomes]
rs9872642	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014381	chr3:158070451-158350118	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1000904	chr3:158094357-158159317	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158124600-158146600	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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