Variant report

Variant	rs7618252
Chromosome Location	chr3:158178385-158178386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:158176970..158179072-chr3:158183835..158186830,2	K562	blood:
2	chr3:158177518..158180211-chr3:158180565..158183137,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10049160	1.00[EUR][1000 genomes]
rs12330339	1.00[EUR][1000 genomes]
rs13321065	1.00[EUR][1000 genomes]
rs13322986	1.00[EUR][1000 genomes]
rs13323462	1.00[EUR][1000 genomes]
rs1435638	0.90[YRI][hapmap]
rs16829007	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs2363654	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs28396261	1.00[EUR][1000 genomes]
rs28402668	1.00[EUR][1000 genomes]
rs28428827	1.00[EUR][1000 genomes]
rs28506940	1.00[EUR][1000 genomes]
rs28608522	1.00[EUR][1000 genomes]
rs28669117	0.81[AFR][1000 genomes]
rs28680366	1.00[EUR][1000 genomes]
rs28720767	1.00[EUR][1000 genomes]
rs5025785	0.81[AFR][1000 genomes]
rs6441190	1.00[EUR][1000 genomes]
rs6441192	1.00[EUR][1000 genomes]
rs6762087	1.00[EUR][1000 genomes]
rs6765159	1.00[EUR][1000 genomes]
rs6767072	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6775960	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6776674	1.00[EUR][1000 genomes]
rs6784612	1.00[EUR][1000 genomes]
rs6784707	1.00[EUR][1000 genomes]
rs6786770	1.00[EUR][1000 genomes]
rs6787212	1.00[EUR][1000 genomes]
rs6789607	0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs6790259	0.82[AFR][1000 genomes]
rs6798405	1.00[EUR][1000 genomes]
rs6801076	1.00[EUR][1000 genomes]
rs6804113	1.00[EUR][1000 genomes]
rs6804401	0.81[AFR][1000 genomes]
rs6810324	0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73013336	1.00[EUR][1000 genomes]
rs73017472	1.00[EUR][1000 genomes]
rs73028000	1.00[EUR][1000 genomes]
rs73028775	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73028779	1.00[EUR][1000 genomes]
rs73029897	1.00[EUR][1000 genomes]
rs73029899	1.00[EUR][1000 genomes]
rs73030514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73031618	1.00[EUR][1000 genomes]
rs73031643	1.00[EUR][1000 genomes]
rs73031646	1.00[EUR][1000 genomes]
rs7621282	1.00[EUR][1000 genomes]
rs7622013	1.00[EUR][1000 genomes]
rs7627082	1.00[EUR][1000 genomes]
rs7633366	1.00[EUR][1000 genomes]
rs7635356	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7638647	1.00[EUR][1000 genomes]
rs939115	0.93[YRI][hapmap]
rs9810400	0.89[YRI][hapmap]
rs9812307	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs9815348	0.81[AFR][1000 genomes]
rs9817119	1.00[EUR][1000 genomes]
rs9821945	1.00[EUR][1000 genomes]
rs9824822	1.00[EUR][1000 genomes]
rs9829790	1.00[EUR][1000 genomes]
rs9841653	1.00[EUR][1000 genomes]
rs9843252	1.00[EUR][1000 genomes]
rs9846272	1.00[EUR][1000 genomes]
rs9849688	0.89[YRI][hapmap]
rs9852177	1.00[EUR][1000 genomes]
rs9852974	1.00[EUR][1000 genomes]
rs9861322	0.90[YRI][hapmap]
rs9861869	1.00[EUR][1000 genomes]
rs9863618	1.00[EUR][1000 genomes]
rs9868975	1.00[EUR][1000 genomes]
rs9870885	1.00[EUR][1000 genomes]
rs9872642	1.00[EUR][1000 genomes]
rs9877427	1.00[EUR][1000 genomes]
rs9877843	1.00[EUR][1000 genomes]
rs9877873	1.00[EUR][1000 genomes]
rs9878828	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014381	chr3:158070451-158350118	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1004124	chr3:158146715-158808638	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv1013046	chr3:158176582-158244606	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1014557	chr3:158176582-158251602	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158169600-158182400	Weak transcription	Primary B cells from cord blood	blood
2	chr3:158177200-158178600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:158177800-158179600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr3:158177800-158179600	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr3:158178000-158178800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:158178000-158178800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:158178200-158178400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:158178200-158178800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:158178200-158179000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:158178200-158179600	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links