Variant report

Variant	rs7633366
Chromosome Location	chr3:158154789-158154790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10049160	1.00[EUR][1000 genomes]
rs12330339	1.00[EUR][1000 genomes]
rs13321065	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13322986	1.00[EUR][1000 genomes]
rs13323462	1.00[EUR][1000 genomes]
rs16829007	0.89[LWK][hapmap];0.93[MKK][hapmap];0.80[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28396261	1.00[EUR][1000 genomes]
rs28402668	1.00[EUR][1000 genomes]
rs28428827	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28506940	1.00[EUR][1000 genomes]
rs28608522	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28646251	1.00[EUR][1000 genomes]
rs28680366	1.00[EUR][1000 genomes]
rs28720767	1.00[EUR][1000 genomes]
rs56987573	0.90[AFR][1000 genomes]
rs6441190	0.86[ASW][hapmap];1.00[EUR][1000 genomes]
rs6441192	1.00[EUR][1000 genomes]
rs6762087	1.00[EUR][1000 genomes]
rs6762923	1.00[EUR][1000 genomes]
rs6765159	1.00[EUR][1000 genomes]
rs6767072	1.00[EUR][1000 genomes]
rs6775960	1.00[EUR][1000 genomes]
rs6776674	1.00[EUR][1000 genomes]
rs6784612	0.96[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6784707	0.93[ASW][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6786770	1.00[EUR][1000 genomes]
rs6787212	1.00[EUR][1000 genomes]
rs6789607	0.89[LWK][hapmap];0.94[MKK][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6798405	0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6801076	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6804113	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6810324	1.00[EUR][1000 genomes]
rs73013336	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73017472	1.00[EUR][1000 genomes]
rs73028000	1.00[EUR][1000 genomes]
rs73028775	1.00[EUR][1000 genomes]
rs73028779	1.00[EUR][1000 genomes]
rs73029897	1.00[EUR][1000 genomes]
rs73029899	1.00[EUR][1000 genomes]
rs73030514	1.00[EUR][1000 genomes]
rs73031618	1.00[EUR][1000 genomes]
rs73031643	1.00[EUR][1000 genomes]
rs73031646	1.00[EUR][1000 genomes]
rs7613676	1.00[MEX][hapmap]
rs7615598	0.96[YRI][hapmap]
rs7618252	1.00[EUR][1000 genomes]
rs7621282	1.00[EUR][1000 genomes]
rs7622013	0.93[ASW][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7627082	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs7635356	1.00[EUR][1000 genomes]
rs7638647	1.00[EUR][1000 genomes]
rs9817119	1.00[EUR][1000 genomes]
rs9821945	1.00[EUR][1000 genomes]
rs9824822	0.96[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9829790	0.86[ASW][hapmap];0.88[MKK][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs9838425	1.00[EUR][1000 genomes]
rs9841653	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9843252	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs9846272	1.00[EUR][1000 genomes]
rs9852177	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9852974	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9861869	1.00[EUR][1000 genomes]
rs9863618	1.00[EUR][1000 genomes]
rs9868975	1.00[EUR][1000 genomes]
rs9870885	1.00[EUR][1000 genomes]
rs9872642	1.00[EUR][1000 genomes]
rs9877427	1.00[EUR][1000 genomes]
rs9877843	1.00[EUR][1000 genomes]
rs9877873	1.00[EUR][1000 genomes]
rs9878828	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014381	chr3:158070451-158350118	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1000904	chr3:158094357-158159317	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1004124	chr3:158146715-158808638	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv967206	chr3:158149860-158176292	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7633366	RSRC1	cis	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158145600-158164600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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