Variant report

Variant	rs6790282
Chromosome Location	chr3:22448917-22448918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13319473	1.00[YRI][hapmap]
rs13319677	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs13319712	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1548138	1.00[YRI][hapmap]
rs9310692	1.00[AMR][1000 genomes]
rs9310693	1.00[AMR][1000 genomes]
rs9819300	1.00[YRI][hapmap]
rs9830138	1.00[YRI][hapmap]
rs9833741	1.00[YRI][hapmap]
rs9843423	1.00[AMR][1000 genomes]
rs9854027	1.00[YRI][hapmap]
rs9854283	1.00[YRI][hapmap]
rs9858845	1.00[AMR][1000 genomes]
rs9876048	1.00[YRI][hapmap]
rs9876657	1.00[YRI][hapmap]
rs9881532	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9883401	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003211	chr3:22244883-22584229	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv536520	chr3:22244883-22584229	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv428082	chr3:22397625-22539817	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834634	chr3:22420053-22574021	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6790282	PHC1	trans	lymphoblastoid	seeQTL
rs6790282	CCDC19	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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