Variant report
| Variant | rs9833741 |
|---|---|
| Chromosome Location | chr3:22456127-22456128 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:22454300..22456299-chr3:22460627..22462261,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11918893 | 1.00[CEU][hapmap] |
| rs12493819 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs13319473 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs13319677 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13319712 | 1.00[YRI][hapmap] |
| rs1376039 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs1494229 | 1.00[CEU][hapmap] |
| rs1548137 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1548138 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17311915 | 1.00[CEU][hapmap] |
| rs62247342 | 0.93[EUR][1000 genomes] |
| rs62248859 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6790282 | 1.00[YRI][hapmap] |
| rs6808830 | 1.00[CEU][hapmap] |
| rs7611487 | 1.00[CEU][hapmap] |
| rs9819300 | 1.00[YRI][hapmap] |
| rs9830138 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs9854027 | 1.00[YRI][hapmap] |
| rs9854283 | 1.00[YRI][hapmap] |
| rs9876048 | 1.00[YRI][hapmap] |
| rs9876657 | 1.00[YRI][hapmap] |
| rs9881532 | 1.00[YRI][hapmap] |
| rs9883401 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1003211 | chr3:22244883-22584229 | Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv536520 | chr3:22244883-22584229 | Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv428082 | chr3:22397625-22539817 | Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv834634 | chr3:22420053-22574021 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
