Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:52815778..52818231-chr3:60835539..60838352,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10510855	0.93[EUR][1000 genomes]
rs13088848	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1839068	0.86[EUR][1000 genomes]
rs1839069	0.81[EUR][1000 genomes]
rs1947159	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1947160	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2100152	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2142297	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2205354	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2223084	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2250114	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2594132	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2594133	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2594136	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2736748	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2736750	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2736751	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2736752	0.92[EUR][1000 genomes]
rs2736753	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34696953	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35871234	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4974235	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60833800-60839800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr3:60836600-60839000	Weak transcription	Gastric	stomach
3	chr3:60838000-60838200	Weak transcription	Aorta	Aorta

Quick Search: