Variant report

Variant	rs1947159
Chromosome Location	chr3:60843260-60843261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10048949	1.00[CEU][hapmap]
rs10510855	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs13071895	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs13075102	0.82[CEU][hapmap]
rs13078972	1.00[CEU][hapmap]
rs13088848	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1447914	1.00[CEU][hapmap]
rs1839068	0.82[EUR][1000 genomes]
rs1947160	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2100152	0.83[CEU][hapmap];0.90[EUR][1000 genomes]
rs2142297	0.84[EUR][1000 genomes]
rs2205354	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2223084	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2250114	0.83[CEU][hapmap];0.90[EUR][1000 genomes]
rs2594132	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs2594133	0.90[EUR][1000 genomes]
rs2594136	0.85[EUR][1000 genomes]
rs2736748	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs2736750	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs2736751	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs2736752	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs2736753	0.89[EUR][1000 genomes]
rs34696953	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35871234	0.92[EUR][1000 genomes]
rs4974235	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs6766713	1.00[CEU][hapmap]
rs6769544	1.00[CEU][hapmap]
rs6772719	0.84[CEU][hapmap]
rs6780515	1.00[CEU][hapmap]
rs6783370	1.00[CEU][hapmap]
rs6785030	1.00[CEU][hapmap]
rs6785095	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs6785140	1.00[CEU][hapmap]
rs6791272	0.94[CEU][hapmap]
rs67917562	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6793095	1.00[CEU][hapmap]
rs6793385	1.00[CEU][hapmap]
rs6795855	1.00[CEU][hapmap]
rs6803394	1.00[CEU][hapmap]
rs7613542	0.93[CEU][hapmap]
rs7627303	1.00[CEU][hapmap]
rs7638932	0.83[CEU][hapmap]
rs7644380	1.00[CEU][hapmap]
rs7646851	0.82[CEU][hapmap]
rs9754605	1.00[CEU][hapmap]
rs9827591	1.00[CEU][hapmap]
rs9834435	1.00[CEU][hapmap]
rs9849318	1.00[CEU][hapmap]
rs9849474	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60843200-60844800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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