Variant report

Variant	rs7613542
Chromosome Location	chr3:60872879-60872880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10048949	0.93[CEU][hapmap]
rs10510855	0.93[CEU][hapmap];0.87[GIH][hapmap]
rs13071895	0.93[CEU][hapmap];0.94[GIH][hapmap]
rs13078972	0.93[CEU][hapmap]
rs1447914	0.93[CEU][hapmap]
rs1947159	0.93[CEU][hapmap]
rs1947160	0.87[CEU][hapmap]
rs4974235	0.93[CEU][hapmap];0.87[GIH][hapmap]
rs6766713	0.93[CEU][hapmap];0.94[GIH][hapmap]
rs6769544	0.93[CEU][hapmap]
rs6772719	1.00[CEU][hapmap]
rs6772800	1.00[CEU][hapmap]
rs6780515	0.88[ASW][hapmap];0.93[CEU][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs6783370	0.93[CEU][hapmap]
rs6785030	0.93[CEU][hapmap];0.87[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap]
rs6785095	0.87[CEU][hapmap];0.94[GIH][hapmap];0.93[MEX][hapmap]
rs6785140	0.93[CEU][hapmap];0.93[GIH][hapmap]
rs6791272	0.93[CEU][hapmap]
rs6793095	0.93[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap]
rs6793385	0.93[CEU][hapmap];1.00[YRI][hapmap]
rs6795855	0.94[ASW][hapmap];0.93[CEU][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs6803394	0.93[CEU][hapmap];0.94[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap]
rs7627303	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7644380	0.93[CEU][hapmap]
rs7646851	0.85[MEX][hapmap]
rs9754605	0.93[CEU][hapmap]
rs9827591	0.93[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap]
rs9834435	0.93[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap]
rs9849318	0.83[ASW][hapmap];0.93[CEU][hapmap];0.94[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.96[YRI][hapmap]
rs9849474	0.93[CEU][hapmap];0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60871400-60876000	Weak transcription	Pancreas	Pancrea
2	chr3:60871600-60873800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:60871800-60873000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:60872400-60873000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:60872600-60879600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:60872800-60873600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:60872800-60876000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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