Variant report

Variant	rs6792783
Chromosome Location	chr3:24261072-24261073
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24259435..24261786-chr3:24263751..24265876,2	K562	blood:
2	chr3:24258383..24262308-chr3:24263138..24268304,6	K562	blood:
3	chr3:24255386..24257362-chr3:24260711..24262954,2	K562	blood:
4	chr3:24261056..24262787-chr3:24262896..24264635,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17014338	0.95[ASN][1000 genomes]
rs17014340	0.95[ASN][1000 genomes]
rs4858584	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4858592	0.95[ASN][1000 genomes]
rs62253695	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6772213	1.00[ASN][1000 genomes]
rs6772532	1.00[ASN][1000 genomes]
rs7615574	1.00[ASN][1000 genomes]
rs7632417	0.95[ASN][1000 genomes]
rs7644151	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv3733	chr3:24216577-24261749	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24239000-24268200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:24246400-24264400	Weak transcription	Fetal Intestine Small	intestine
3	chr3:24251400-24279200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr3:24252200-24262000	Weak transcription	Fetal Intestine Large	intestine
5	chr3:24252400-24276400	Weak transcription	HepG2	liver
6	chr3:24254800-24261600	Weak transcription	Left Ventricle	heart
7	chr3:24254800-24261800	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:24255000-24262200	Weak transcription	Adipose Nuclei	Adipose
9	chr3:24255000-24268000	Weak transcription	Brain Anterior Caudate	brain
10	chr3:24255800-24261200	Weak transcription	NHDF-Ad	bronchial
11	chr3:24255800-24261600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr3:24255800-24262400	Weak transcription	Right Atrium	heart
13	chr3:24256200-24261200	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:24256200-24261800	Weak transcription	Lung	lung
15	chr3:24256200-24263800	Weak transcription	Aorta	Aorta
16	chr3:24256400-24262800	Weak transcription	Liver	Liver
17	chr3:24257000-24261600	Weak transcription	Psoas Muscle	Psoas
18	chr3:24257400-24274000	Weak transcription	Pancreas	Pancrea
19	chr3:24257800-24261600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr3:24260000-24264800	Enhancers	NHEK	skin
21	chr3:24260200-24261800	Enhancers	Placenta Amnion	Placenta Amnion
22	chr3:24260200-24263000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr3:24260200-24264800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:24260200-24265000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:24260400-24265000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:24260600-24261800	Weak transcription	Ovary	ovary
27	chr3:24260600-24263600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr3:24260600-24264600	Enhancers	HSMMtube	muscle
29	chr3:24260600-24264800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr3:24260600-24264800	Enhancers	Stomach Smooth Muscle	stomach
31	chr3:24260800-24261400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:24260800-24261400	Weak transcription	Placenta	Placenta
33	chr3:24260800-24261600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr3:24260800-24262400	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr3:24260800-24264600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr3:24260800-24264800	Enhancers	HSMM	muscle
37	chr3:24261000-24261600	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr3:24261000-24262000	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr3:24261000-24262800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr3:24261000-24262800	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr3:24261000-24263000	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr3:24261000-24264800	Enhancers	HMEC	breast

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