The 2.0 version of rSNPBase

Variant report

Variant rs4858592
Chromosome Location chr3:24262399-24262400
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:24239000-24268200 Weak transcription Rectal Mucosa Donor 31 rectum
2 chr3:24246400-24264400 Weak transcription Fetal Intestine Small intestine
3 chr3:24251400-24279200 Weak transcription Rectal Mucosa Donor 29 rectum
4 chr3:24252400-24276400 Weak transcription HepG2 liver
5 chr3:24255000-24268000 Weak transcription Brain Anterior Caudate brain
6 chr3:24255800-24262400 Weak transcription Right Atrium heart
7 chr3:24256200-24263800 Weak transcription Aorta Aorta
8 chr3:24256400-24262800 Weak transcription Liver Liver
9 chr3:24257400-24274000 Weak transcription Pancreas Pancrea
10 chr3:24260000-24264800 Enhancers NHEK skin
11 chr3:24260200-24263000 Enhancers ES-I3 Cell Line embryonic stem cell
12 chr3:24260200-24264800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr3:24260200-24265000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr3:24260400-24265000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr3:24260600-24263600 Enhancers Breast Myoepithelial Primary Cells Breast
16 chr3:24260600-24264600 Enhancers HSMMtube muscle
17 chr3:24260600-24264800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr3:24260600-24264800 Enhancers Stomach Smooth Muscle stomach
19 chr3:24260800-24262400 Enhancers iPS-15b Cell Line embryonic stem cell
20 chr3:24260800-24264600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
21 chr3:24260800-24264800 Enhancers HSMM muscle
22 chr3:24261000-24262800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr3:24261000-24262800 Enhancers HUES48 Cell Line embryonic stem cell
24 chr3:24261000-24263000 Enhancers HUES6 Cell Line embryonic stem cell
25 chr3:24261000-24264800 Enhancers HMEC breast
26 chr3:24261200-24262800 Enhancers Hela-S3 cervix
27 chr3:24261200-24264600 Enhancers Colon Smooth Muscle Colon
28 chr3:24261200-24264800 Enhancers NHDF-Ad bronchial
29 chr3:24261400-24262600 Enhancers Placenta Placenta
30 chr3:24261400-24263200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr3:24261400-24264800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr3:24261600-24262600 Enhancers Left Ventricle heart
33 chr3:24261600-24263200 Enhancers Fetal Heart heart
34 chr3:24261600-24263200 Enhancers Rectal Smooth Muscle rectum
35 chr3:24261600-24263200 Enhancers Skeletal Muscle Male skeletal muscle
36 chr3:24261600-24263400 Enhancers Psoas Muscle Psoas
37 chr3:24261600-24263400 Enhancers Skeletal Muscle Female skeletal muscle
38 chr3:24261800-24262400 Enhancers Fetal Muscle Trunk muscle
39 chr3:24261800-24262600 Enhancers Right Ventricle heart
40 chr3:24261800-24262800 Enhancers Fetal Muscle Leg muscle
41 chr3:24261800-24262800 Weak transcription Placenta Amnion Placenta Amnion
42 chr3:24261800-24263000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
43 chr3:24261800-24263000 Enhancers Duodenum Smooth Muscle Duodenum
44 chr3:24261800-24263000 Enhancers Ovary ovary
45 chr3:24261800-24263400 Enhancers Muscle Satellite Cultured Cells --
46 chr3:24262000-24262400 Weak transcription Lung lung
47 chr3:24262000-24262600 Enhancers H1 Cell Line embryonic stem cell
48 chr3:24262000-24262600 Enhancers iPS-18 Cell Line embryonic stem cell
49 chr3:24262000-24262600 Enhancers iPS-20b Cell Line embryonic stem cell
50 chr3:24262000-24262600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015