Variant report

Variant	rs13097337
Chromosome Location	chr3:24232532-24232533
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24232065..24234894-chr3:24391713..24393801,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13073046	1.00[AFR][1000 genomes]
rs13084054	1.00[AFR][1000 genomes]
rs13087680	1.00[AFR][1000 genomes]
rs34007810	1.00[AFR][1000 genomes]
rs35167971	1.00[AFR][1000 genomes]
rs4858592	0.81[EUR][1000 genomes]
rs71328469	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv3733	chr3:24216577-24261749	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24223200-24234400	Weak transcription	HepG2	liver
2	chr3:24223400-24233400	Weak transcription	Liver	Liver
3	chr3:24225000-24232800	Weak transcription	Fetal Lung	lung
4	chr3:24227400-24238800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:24227600-24233600	Weak transcription	Gastric	stomach
6	chr3:24227800-24233000	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:24227800-24233400	Weak transcription	Adipose Nuclei	Adipose
8	chr3:24227800-24233400	Weak transcription	Brain Angular Gyrus	brain
9	chr3:24227800-24233400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:24227800-24233400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr3:24227800-24233600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:24227800-24233600	Weak transcription	Spleen	Spleen
13	chr3:24227800-24234200	Weak transcription	Brain Germinal Matrix	brain
14	chr3:24227800-24239200	Weak transcription	Pancreas	Pancrea
15	chr3:24227800-24254200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:24228800-24233400	Weak transcription	NHDF-Ad	bronchial
17	chr3:24231800-24233200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr3:24231800-24238200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:24232000-24233200	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:24232000-24233200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr3:24232000-24234600	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr3:24232200-24232600	Weak transcription	Right Atrium	heart
23	chr3:24232200-24233600	Weak transcription	Left Ventricle	heart
24	chr3:24232200-24234400	Weak transcription	Fetal Intestine Large	intestine
25	chr3:24232400-24233400	Weak transcription	Fetal Brain Male	brain
26	chr3:24232400-24233800	Weak transcription	Psoas Muscle	Psoas
27	chr3:24232400-24234200	Weak transcription	Aorta	Aorta
28	chr3:24232400-24234400	Weak transcription	Fetal Intestine Small	intestine
29	chr3:24232400-24239200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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