Variant report

Variant	rs35167971
Chromosome Location	chr3:24174392-24174393
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24171878..24173570-chr3:24173674..24175384,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13073046	1.00[AFR][1000 genomes]
rs13084054	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13087680	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs13097337	1.00[AFR][1000 genomes]
rs34007810	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs71328469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24156400-24187800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:24161200-24176400	Weak transcription	Pancreas	Pancrea
3	chr3:24162800-24178200	Weak transcription	Spleen	Spleen
4	chr3:24165800-24179000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:24167000-24197800	Weak transcription	K562	blood
6	chr3:24167800-24187800	Weak transcription	Small Intestine	intestine
7	chr3:24168600-24179200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:24168800-24181200	Weak transcription	Brain Angular Gyrus	brain
9	chr3:24169000-24187800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:24169800-24186200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:24170000-24176000	Weak transcription	Lung	lung
12	chr3:24170000-24178200	Weak transcription	Gastric	stomach
13	chr3:24170200-24178200	Weak transcription	Stomach Mucosa	stomach
14	chr3:24170800-24184600	Weak transcription	Brain Anterior Caudate	brain
15	chr3:24171000-24176400	Strong transcription	Liver	Liver
16	chr3:24171000-24177400	Strong transcription	Fetal Intestine Small	intestine
17	chr3:24171000-24178200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:24171200-24176400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:24171200-24176400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:24171200-24176800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:24171400-24174400	Strong transcription	Fetal Stomach	stomach
22	chr3:24171400-24174400	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr3:24171400-24186200	Strong transcription	Fetal Intestine Large	intestine
24	chr3:24171600-24175200	Strong transcription	Stomach Smooth Muscle	stomach
25	chr3:24171600-24176000	Strong transcription	Aorta	Aorta
26	chr3:24171600-24176400	Weak transcription	NHLF	lung
27	chr3:24171600-24176600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:24171600-24178800	Weak transcription	HMEC	breast
29	chr3:24171600-24179200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:24172000-24178200	Weak transcription	Psoas Muscle	Psoas
31	chr3:24172200-24176000	Strong transcription	Adipose Nuclei	Adipose
32	chr3:24172600-24176600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:24172800-24174800	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr3:24173000-24174400	Strong transcription	Left Ventricle	heart
35	chr3:24173000-24174600	Strong transcription	Placenta Amnion	Placenta Amnion
36	chr3:24173000-24176600	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr3:24173000-24187400	Weak transcription	Fetal Brain Male	brain
38	chr3:24173200-24174600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:24173400-24174400	Strong transcription	Right Ventricle	heart
40	chr3:24173600-24175000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr3:24173600-24175200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:24173600-24175400	Weak transcription	Placenta	Placenta
43	chr3:24173600-24179000	Weak transcription	HepG2	liver
44	chr3:24173600-24179400	Weak transcription	Esophagus	oesophagus
45	chr3:24173600-24188200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr3:24173800-24174600	Weak transcription	Fetal Lung	lung
47	chr3:24173800-24176200	Weak transcription	NHDF-Ad	bronchial
48	chr3:24173800-24176400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr3:24173800-24183200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr3:24174000-24183400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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