Variant report

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr3:24142081-24142406	K562	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24141927..24144068-chr3:24144999..24146572,2	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-THRB-1	chr3:24141465-24143037	XLOC_003068
2	lnc-THRB-1	chr3:24141466-24143035	XLOC_003068
3	lnc-THRB-1	chr3:24141485-24143037	XLOC_003068
4	lnc-THRB-1	chr3:24141465-24143037	ENSG00000224074.2
5	lnc-THRB-1	chr3:24141932-24143037	ENSG00000224074.2
6	lnc-THRB-1	chr3:24141932-24143037	NONHSAT088693

No data

Variant related genes	Relation type
NPM1P23	TF binding region

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13073046	1.00[AFR][1000 genomes]
rs13087680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13097337	1.00[AFR][1000 genomes]
rs1876038	1.00[CEU][hapmap]
rs34007810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35167971	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71328469	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24137200-24142200	Weak transcription	A549	lung
2	chr3:24137800-24142800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:24138600-24142200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:24139000-24142200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:24139000-24142200	Weak transcription	HSMM	muscle
6	chr3:24139000-24142800	Weak transcription	HSMMtube	muscle
7	chr3:24139400-24142600	Weak transcription	Right Atrium	heart
8	chr3:24141600-24144000	Enhancers	Fetal Stomach	stomach
9	chr3:24141800-24142200	Enhancers	Liver	Liver
10	chr3:24141800-24144000	Enhancers	Fetal Lung	lung
11	chr3:24141800-24144000	Enhancers	Stomach Smooth Muscle	stomach
12	chr3:24142000-24142200	Enhancers	HepG2	liver
13	chr3:24142000-24142600	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr3:24142000-24143200	Enhancers	Fetal Muscle Leg	muscle
15	chr3:24142000-24143600	Enhancers	NHLF	lung
16	chr3:24142000-24144000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:24142000-24144400	Enhancers	NHDF-Ad	bronchial

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