Variant report

Variant	rs67932352
Chromosome Location	chr13:51492237-51492238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51481922..51486486-chr13:51489921..51494512,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233672	Chromatin interaction
ENSG00000136104	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10400653	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1041017	0.81[AFR][1000 genomes]
rs11616524	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11617366	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075018	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075030	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73186365	1.00[ASN][1000 genomes]
rs73186367	1.00[ASN][1000 genomes]
rs73186368	1.00[ASN][1000 genomes]
rs73186369	1.00[ASN][1000 genomes]
rs73186371	1.00[ASN][1000 genomes]
rs73186372	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73186374	1.00[ASN][1000 genomes]
rs73186376	1.00[ASN][1000 genomes]
rs73186381	1.00[ASN][1000 genomes]
rs73186382	1.00[ASN][1000 genomes]
rs73186390	1.00[ASN][1000 genomes]
rs7331290	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999515	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535529	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535531	0.86[ASN][1000 genomes]
rs9535533	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535538	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900077	chr13:51446114-51514831	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51485000-51496200	Weak transcription	Ovary	ovary
2	chr13:51485200-51495600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr13:51485400-51504200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr13:51486000-51495800	Weak transcription	Fetal Brain Female	brain
5	chr13:51486600-51528400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr13:51486800-51495600	Weak transcription	Fetal Intestine Small	intestine
7	chr13:51487000-51498400	Weak transcription	Fetal Stomach	stomach
8	chr13:51487400-51493800	Genic enhancers	Fetal Thymus	thymus
9	chr13:51488400-51494600	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr13:51488400-51496200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr13:51488600-51493600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr13:51488600-51493600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr13:51488600-51494200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr13:51488800-51492400	Enhancers	Fetal Lung	lung
15	chr13:51488800-51493600	Enhancers	Brain Germinal Matrix	brain
16	chr13:51489200-51493600	Enhancers	Stomach Smooth Muscle	stomach
17	chr13:51489200-51493800	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr13:51489600-51496000	Weak transcription	HSMM	muscle
19	chr13:51489600-51496400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr13:51489600-51496400	Weak transcription	Fetal Kidney	kidney
21	chr13:51489600-51508200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr13:51489800-51496000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr13:51490000-51496400	Weak transcription	Aorta	Aorta
24	chr13:51490600-51492400	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr13:51490600-51493000	Enhancers	Right Atrium	heart
26	chr13:51490600-51493600	Enhancers	Colon Smooth Muscle	Colon
27	chr13:51490600-51494200	Enhancers	Brain Hippocampus Middle	brain
28	chr13:51490800-51492400	Enhancers	Lung	lung
29	chr13:51490800-51494400	Enhancers	Brain Anterior Caudate	brain
30	chr13:51491000-51492400	Enhancers	Left Ventricle	heart
31	chr13:51491000-51493800	Enhancers	Right Ventricle	heart
32	chr13:51491000-51494000	Enhancers	Rectal Smooth Muscle	rectum
33	chr13:51491200-51492800	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr13:51491200-51493000	Genic enhancers	Thymus	Thymus
35	chr13:51491200-51493800	Enhancers	Primary T cells from cord blood	blood
36	chr13:51491200-51494200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr13:51491200-51495000	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr13:51491200-51496000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr13:51491400-51492600	Weak transcription	Esophagus	oesophagus
40	chr13:51491400-51493000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
41	chr13:51491400-51493200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr13:51491400-51493600	Enhancers	Brain Cingulate Gyrus	brain
43	chr13:51491400-51494000	Enhancers	Brain Substantia Nigra	brain
44	chr13:51491400-51495200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr13:51491400-51496000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr13:51491400-51496400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr13:51491400-51496600	Weak transcription	Fetal Intestine Large	intestine
48	chr13:51491400-51497000	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr13:51491600-51493000	Weak transcription	K562	blood
50	chr13:51491600-51493400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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