Variant report

Variant	rs6793900
Chromosome Location	chr3:51517307-51517308
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1031925	0.86[AMR][1000 genomes]
rs1055429	0.92[AMR][1000 genomes]
rs10865970	0.81[AMR][1000 genomes]
rs11130293	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11721253	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1480354	0.81[AMR][1000 genomes]
rs1552074	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2127655	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4317086	0.80[AMR][1000 genomes]
rs4611808	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4687568	0.84[AMR][1000 genomes]
rs4687569	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4687721	0.86[AMR][1000 genomes]
rs4687734	0.84[AMR][1000 genomes]
rs4974105	0.82[AMR][1000 genomes]
rs4974106	0.81[AMR][1000 genomes]
rs6445628	0.82[AMR][1000 genomes]
rs6445791	0.81[AMR][1000 genomes]
rs6787312	0.80[AMR][1000 genomes]
rs6809155	0.86[AMR][1000 genomes]
rs7372658	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs751075	0.82[AMR][1000 genomes]
rs9311469	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6793900	TEX264	cis	Nerve Tibial	GTEx
rs6793900	TEX264	cis	Esophagus Muscularis	GTEx
rs6793900	TEX264	cis	Artery Tibial	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51467800-51524000	Weak transcription	Small Intestine	intestine
2	chr3:51491400-51532800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:51495000-51532600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:51495800-51518200	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr3:51495800-51518200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:51495800-51526800	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr3:51495800-51531800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:51496000-51517800	Strong transcription	Fetal Muscle Trunk	muscle
9	chr3:51496000-51518400	Strong transcription	Fetal Stomach	stomach
10	chr3:51496000-51531800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:51496200-51518000	Strong transcription	Placenta	Placenta
12	chr3:51496200-51530600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr3:51496200-51531000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr3:51496400-51525800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr3:51497200-51524400	Weak transcription	Right Ventricle	heart
16	chr3:51497600-51518200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr3:51499400-51532800	Weak transcription	Fetal Heart	heart
18	chr3:51499600-51517800	Strong transcription	Fetal Intestine Small	intestine
19	chr3:51500600-51532800	Weak transcription	Fetal Kidney	kidney
20	chr3:51501000-51532400	Weak transcription	Psoas Muscle	Psoas
21	chr3:51501000-51532800	Weak transcription	NH-A	brain
22	chr3:51504800-51533000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr3:51505000-51531600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr3:51505000-51533000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr3:51506400-51523200	Weak transcription	HSMMtube	muscle
26	chr3:51506600-51523000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr3:51506600-51530800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr3:51506600-51532600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr3:51506600-51532600	Weak transcription	K562	blood
30	chr3:51508200-51529800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:51508600-51518000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr3:51509000-51526400	Strong transcription	Fetal Thymus	thymus
33	chr3:51509600-51518200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr3:51509800-51525200	Weak transcription	Colonic Mucosa	Colon
35	chr3:51510200-51520400	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr3:51510600-51522000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr3:51511000-51518200	Strong transcription	Liver	Liver
38	chr3:51511200-51519800	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr3:51511400-51518000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr3:51511400-51519600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr3:51511400-51526600	Strong transcription	Duodenum Mucosa	Duodenum
42	chr3:51511600-51518000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr3:51511600-51518200	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr3:51511600-51518400	Strong transcription	Primary B cells from peripheral blood	blood
45	chr3:51511600-51518600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr3:51511600-51518600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr3:51511800-51518200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr3:51511800-51518200	Strong transcription	Adipose Nuclei	Adipose
49	chr3:51511800-51518400	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr3:51512000-51517800	Strong transcription	Thymus	Thymus

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