Variant report

Variant	rs11721253
Chromosome Location	chr3:51547219-51547220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1031925	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1055429	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10865970	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11130292	0.82[AMR][1000 genomes]
rs11130293	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383251	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1480354	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1542574	0.90[ASN][1000 genomes]
rs1552074	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2127655	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2164599	0.82[EUR][1000 genomes]
rs4317086	0.84[AMR][1000 genomes]
rs4355273	0.80[AMR][1000 genomes]
rs4611808	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4687568	0.88[AMR][1000 genomes]
rs4687569	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4687721	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4687734	0.88[AMR][1000 genomes]
rs4974105	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4974106	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58816979	0.83[AFR][1000 genomes]
rs6445620	0.81[AMR][1000 genomes]
rs6445628	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6445791	0.84[AMR][1000 genomes]
rs6771081	0.81[AMR][1000 genomes]
rs6775666	0.80[AMR][1000 genomes]
rs6787312	0.84[AMR][1000 genomes]
rs6793900	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6809155	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7372658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73834263	0.83[AFR][1000 genomes]
rs73834266	0.83[AFR][1000 genomes]
rs751075	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7625006	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7625821	0.81[EUR][1000 genomes]
rs9311469	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11721253	TEX264	cis	Artery Tibial	GTEx
rs11721253	TEX264	cis	Nerve Tibial	GTEx
rs11721253	TEX264	cis	Esophagus Muscularis	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51544200-51548000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:51546600-51549600	Weak transcription	HepG2	liver

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