Variant report

Variant	rs73834263
Chromosome Location	chr3:51640434-51640435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11130293	0.88[AFR][1000 genomes]
rs11721253	0.83[AFR][1000 genomes]
rs55700670	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58816979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60494162	1.00[AMR][1000 genomes]
rs73834266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834270	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834275	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73837441	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv997264	chr3:51584056-51689648	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv536570	chr3:51584056-51689648	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv999553	chr3:51584056-51696052	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51600800-51654600	Weak transcription	Stomach Mucosa	stomach
2	chr3:51602800-51643800	Weak transcription	Right Atrium	heart
3	chr3:51613400-51643600	Weak transcription	Pancreas	Pancrea
4	chr3:51625200-51655400	Weak transcription	Gastric	stomach
5	chr3:51625400-51641000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:51625400-51642200	Weak transcription	Brain Germinal Matrix	brain
7	chr3:51625400-51663400	Weak transcription	Right Ventricle	heart
8	chr3:51625600-51642600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:51625600-51643400	Weak transcription	Esophagus	oesophagus
10	chr3:51625600-51654000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:51625600-51654000	Weak transcription	Ovary	ovary
12	chr3:51625600-51655400	Weak transcription	Aorta	Aorta
13	chr3:51625600-51658200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr3:51625800-51642000	Weak transcription	HSMMtube	muscle
15	chr3:51625800-51642200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:51625800-51645200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr3:51625800-51647000	Weak transcription	Fetal Brain Female	brain
18	chr3:51625800-51651000	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:51625800-51654000	Weak transcription	Left Ventricle	heart
20	chr3:51625800-51655200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:51625800-51655400	Weak transcription	Lung	lung
22	chr3:51625800-51655800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr3:51626000-51651400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:51626000-51654600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:51626000-51656600	Weak transcription	Placenta	Placenta
26	chr3:51626400-51651000	Weak transcription	Brain Anterior Caudate	brain
27	chr3:51626600-51644800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:51628600-51640800	Weak transcription	K562	blood
29	chr3:51628800-51660800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr3:51629400-51642400	Weak transcription	Fetal Intestine Small	intestine
31	chr3:51629400-51644800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr3:51629600-51643000	Weak transcription	Spleen	Spleen
33	chr3:51629600-51643200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr3:51629600-51643200	Weak transcription	Hela-S3	cervix
35	chr3:51629600-51645800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:51629600-51652200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:51629800-51641400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr3:51629800-51642000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr3:51629800-51644200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr3:51629800-51654000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr3:51629800-51655200	Weak transcription	Fetal Lung	lung
42	chr3:51630000-51643200	Weak transcription	Stomach Smooth Muscle	stomach
43	chr3:51630200-51651200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr3:51630400-51661400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr3:51630800-51640600	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr3:51630800-51641600	Weak transcription	Fetal Intestine Large	intestine
47	chr3:51630800-51643200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr3:51630800-51644600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr3:51630800-51647800	Weak transcription	Adipose Nuclei	Adipose
50	chr3:51630800-51661400	Weak transcription	Rectal Mucosa Donor 29	rectum

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