Variant report

Variant	rs73834275
Chromosome Location	chr3:51719045-51719046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:51711799..51714156-chr3:51719027..51720830,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs58816979	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60494162	1.00[AMR][1000 genomes]
rs73834263	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834266	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838921	1.00[AMR][1000 genomes]
rs73838923	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv1814919	chr3:51703488-51752684	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51706400-51733400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:51706400-51741000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:51706600-51719800	Weak transcription	Psoas Muscle	Psoas
4	chr3:51706600-51721200	Weak transcription	Fetal Brain Male	brain
5	chr3:51706600-51724600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:51706600-51739600	Weak transcription	Small Intestine	intestine
7	chr3:51707800-51740400	Strong transcription	Fetal Intestine Small	intestine
8	chr3:51708800-51738800	Strong transcription	Fetal Intestine Large	intestine
9	chr3:51714000-51722400	Enhancers	Right Atrium	heart
10	chr3:51714400-51722200	Genic enhancers	Fetal Muscle Leg	muscle
11	chr3:51714400-51722400	Genic enhancers	Fetal Muscle Trunk	muscle
12	chr3:51714800-51721000	Enhancers	Fetal Heart	heart
13	chr3:51715800-51721400	Genic enhancers	Fetal Thymus	thymus
14	chr3:51716000-51720000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr3:51716000-51720200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:51716200-51719600	Strong transcription	Brain Inferior Temporal Lobe	brain
17	chr3:51716200-51719600	Strong transcription	Fetal Stomach	stomach
18	chr3:51716200-51720000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr3:51716200-51720000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr3:51716200-51720000	Weak transcription	NH-A	brain
21	chr3:51716200-51720200	Strong transcription	Brain Hippocampus Middle	brain
22	chr3:51716200-51720800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr3:51716200-51726200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr3:51716200-51737000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr3:51716400-51720000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:51716400-51720200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr3:51716400-51722600	Genic enhancers	Primary B cells from peripheral blood	blood
28	chr3:51716400-51741200	Weak transcription	Fetal Kidney	kidney
29	chr3:51716600-51719400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr3:51716600-51719600	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr3:51716600-51719600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr3:51716600-51719600	Strong transcription	NHEK	skin
33	chr3:51716600-51719800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr3:51716600-51719800	Strong transcription	Placenta	Placenta
35	chr3:51716600-51720000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr3:51716600-51720000	Weak transcription	HUVEC	blood vessel
37	chr3:51716600-51720400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr3:51716600-51721000	Strong transcription	A549	lung
39	chr3:51716600-51722600	Strong transcription	HepG2	liver
40	chr3:51716600-51722800	Genic enhancers	Spleen	Spleen
41	chr3:51716600-51724800	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr3:51716800-51719600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr3:51716800-51719600	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr3:51716800-51719600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr3:51716800-51719800	Weak transcription	Stomach Mucosa	stomach
46	chr3:51716800-51720000	Genic enhancers	Primary T cells fromperipheralblood	blood
47	chr3:51716800-51720200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr3:51716800-51720200	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
49	chr3:51716800-51726600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr3:51716800-51738800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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