Variant report

Variant	rs6794096
Chromosome Location	chr3:45804771-45804772
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28401433	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs34458611	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61603235	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6786791	0.83[YRI][hapmap];0.87[AMR][1000 genomes]
rs73830458	0.87[AMR][1000 genomes]
rs73830459	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9811206	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9823820	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9861547	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9873753	0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv876735	chr3:45764246-45832052	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45789800-45817200	Weak transcription	Pancreas	Pancrea
2	chr3:45803200-45804800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:45803200-45804800	Genic enhancers	Thymus	Thymus
4	chr3:45803200-45807200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:45804000-45808200	Strong transcription	Fetal Intestine Small	intestine
6	chr3:45804200-45808000	Strong transcription	Dnd41	blood
7	chr3:45804400-45808000	Strong transcription	Fetal Intestine Large	intestine
8	chr3:45804600-45805600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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