Variant report

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:45802267..45803322-chr3:45970211..45971183,11	K562	blood:
2	chr3:45802399..45803247-chr3:45873770..45874796,5	MCF-7	breast:
3	chr3:45802348..45803293-chr3:45873930..45874487,3	MCF-7	breast:
4	chr3:45802510..45803116-chr3:45835369..45835958,3	MCF-7	breast:
5	chr3:45552523..45553271-chr3:45802746..45803372,2	MCF-7	breast:
6	chr3:45792218..45796463-chr3:45802323..45806470,4	K562	blood:
7	chr3:45801846..45803268-chr3:46119981..46120996,10	K562	blood:
8	chr3:45802251..45804288-chr3:45947027..45949509,2	K562	blood:
9	chr3:45802238..45803753-chr3:45947987..45949013,6	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:10)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv876735	chr3:45764246-45832052	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45789800-45817200	Weak transcription	Pancreas	Pancrea
2	chr3:45800800-45804200	Weak transcription	Dnd41	blood
3	chr3:45801600-45803600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:45802000-45803200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:45802200-45803200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr3:45802200-45804200	Enhancers	Fetal Thymus	thymus
7	chr3:45802400-45804000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:45802600-45803200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr3:45802800-45803200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr3:45802800-45803200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr3:45802800-45803200	Enhancers	Brain Substantia Nigra	brain
12	chr3:45802800-45803200	Enhancers	Duodenum Mucosa	Duodenum
13	chr3:45802800-45803200	Enhancers	Thymus	Thymus
14	chr3:45802800-45803200	Enhancers	GM12878-XiMat	blood
15	chr3:45802800-45803600	Enhancers	Fetal Intestine Large	intestine
16	chr3:45802800-45804000	Genic enhancers	Fetal Intestine Small	intestine
17	chr3:45802800-45804400	Enhancers	Liver	Liver
18	chr3:45802800-45804600	Bivalent Enhancer	HepG2	liver
19	chr3:45803000-45803200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
20	chr3:45803000-45803200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr3:45803000-45803200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:45803000-45803400	Active TSS	Hela-S3	cervix

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