Variant report

Variant	rs6794345
Chromosome Location	chr3:42934548-42934549
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2288373	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6773703	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6778536	1.00[AMR][1000 genomes]
rs6778645	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6778671	1.00[AMR][1000 genomes]
rs6780217	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6805091	1.00[AMR][1000 genomes]
rs7621158	1.00[AMR][1000 genomes]
rs9859536	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3783	chr3:42926223-42970597	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42924000-42935800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:42929000-42937200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:42931000-42937800	Weak transcription	Placenta	Placenta
4	chr3:42933200-42938200	Enhancers	Stomach Mucosa	stomach
5	chr3:42933400-42936600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:42933800-42936600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:42933800-42936600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:42933800-42936600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:42933800-42941800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:42934000-42936800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:42934000-42937600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:42934000-42937600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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