Variant report

Variant	rs6805091
Chromosome Location	chr3:43040581-43040582
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2288373	1.00[AMR][1000 genomes]
rs6773703	1.00[AMR][1000 genomes]
rs6778536	1.00[AMR][1000 genomes]
rs6778645	1.00[AMR][1000 genomes]
rs6778671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6780217	1.00[AMR][1000 genomes]
rs6794345	1.00[AMR][1000 genomes]
rs7621158	1.00[AMR][1000 genomes]
rs9859536	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv460523	chr3:43025986-43063406	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590150	chr3:43025986-43063406	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43032600-43040800	Weak transcription	Placenta	Placenta
2	chr3:43034200-43043400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:43037200-43044200	Enhancers	Fetal Muscle Leg	muscle
4	chr3:43037800-43044600	Enhancers	Liver	Liver
5	chr3:43038400-43043400	Enhancers	Brain Substantia Nigra	brain
6	chr3:43038600-43040600	Weak transcription	Brain Angular Gyrus	brain
7	chr3:43038600-43040600	Enhancers	Stomach Smooth Muscle	stomach
8	chr3:43038600-43040800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr3:43038600-43040800	Weak transcription	Pancreas	Pancrea
10	chr3:43038800-43040600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:43038800-43040800	Weak transcription	Adipose Nuclei	Adipose
12	chr3:43038800-43040800	Weak transcription	Psoas Muscle	Psoas
13	chr3:43038800-43042400	Weak transcription	Lung	lung
14	chr3:43039200-43040800	Weak transcription	Brain Anterior Caudate	brain
15	chr3:43039200-43041000	Enhancers	Spleen	Spleen
16	chr3:43039400-43040800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:43039400-43042400	Weak transcription	Right Ventricle	heart
18	chr3:43039600-43040600	Weak transcription	Colon Smooth Muscle	Colon
19	chr3:43039600-43040800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr3:43039600-43040800	Weak transcription	Ovary	ovary
21	chr3:43039600-43040800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:43039600-43040800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr3:43039600-43043200	Weak transcription	Fetal Intestine Small	intestine
24	chr3:43039800-43044200	Enhancers	Brain Hippocampus Middle	brain
25	chr3:43040000-43043600	Enhancers	Fetal Muscle Trunk	muscle
26	chr3:43040000-43044600	Enhancers	Fetal Stomach	stomach
27	chr3:43040200-43041200	Enhancers	Right Atrium	heart
28	chr3:43040200-43043400	Enhancers	Brain Cingulate Gyrus	brain
29	chr3:43040200-43043400	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr3:43040200-43044600	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr3:43040400-43041800	Enhancers	Fetal Brain Male	brain
32	chr3:43040400-43043200	Enhancers	Rectal Smooth Muscle	rectum
33	chr3:43040400-43044000	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links