Variant report

Variant	rs6794862
Chromosome Location	chr3:157023019-157023020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs60379417	0.84[AFR][1000 genomes]
rs6795781	0.82[AFR][1000 genomes]
rs7645454	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157004800-157028200	Weak transcription	HUVEC	blood vessel
2	chr3:157013000-157032600	Weak transcription	NH-A	brain
3	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:157019000-157029000	Weak transcription	NHLF	lung
5	chr3:157019200-157028200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:157019200-157028400	Weak transcription	Osteobl	bone
7	chr3:157019400-157028200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:157021600-157023600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:157021800-157035400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:157022200-157023400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:157022400-157023400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:157023000-157023200	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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