Variant report

Variant	rs6795781
Chromosome Location	chr3:157017863-157017864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10513511	0.85[ASN][1000 genomes]
rs16827507	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17388582	0.87[ASN][1000 genomes]
rs17454198	0.87[ASN][1000 genomes]
rs1846849	0.97[ASN][1000 genomes]
rs60379417	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60626378	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6794862	0.82[AFR][1000 genomes]
rs6795007	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73156737	0.91[ASN][1000 genomes]
rs73156754	0.85[ASN][1000 genomes]
rs73873630	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7430655	0.83[ASN][1000 genomes]
rs7643492	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7645454	0.84[AFR][1000 genomes]
rs950418	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157004800-157028200	Weak transcription	HUVEC	blood vessel
2	chr3:157013000-157018600	Weak transcription	K562	blood
3	chr3:157013000-157032600	Weak transcription	NH-A	brain
4	chr3:157013200-157019600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:157014400-157018800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:157014400-157019200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:157015400-157019600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:157017400-157018000	Enhancers	NHLF	lung
10	chr3:157017400-157018200	Enhancers	HSMM	muscle
11	chr3:157017400-157019200	Enhancers	Osteobl	bone
12	chr3:157017400-157019400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr3:157017400-157019400	Enhancers	NHDF-Ad	bronchial
14	chr3:157017600-157019200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:157017800-157018200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:157017800-157019000	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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