Variant report

Variant	rs6795007
Chromosome Location	chr3:157013999-157014000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157008081..157011337-chr3:157013720..157016384,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10513504	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs10513511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[ASN][1000 genomes]
rs10513513	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs11918443	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]
rs11926562	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap]
rs1403104	0.80[LWK][hapmap]
rs16827378	0.86[LWK][hapmap];0.90[MKK][hapmap]
rs16827392	0.86[LWK][hapmap];0.91[MKK][hapmap]
rs16827507	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16827579	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs17387112	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs17388582	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17454198	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1846849	1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60379417	0.95[ASN][1000 genomes]
rs60626378	0.95[ASN][1000 genomes]
rs6795781	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73156737	0.92[ASN][1000 genomes]
rs73156754	0.85[ASN][1000 genomes]
rs73873630	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7430655	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7643492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs950418	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157000600-157015400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:157004800-157028200	Weak transcription	HUVEC	blood vessel
3	chr3:157005600-157015000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:157010800-157014800	Enhancers	Osteobl	bone
5	chr3:157010800-157015000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:157011000-157014600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:157011200-157017800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:157012200-157014400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:157012200-157014400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:157012200-157014400	Enhancers	NHDF-Ad	bronchial
11	chr3:157012400-157014000	Weak transcription	Fetal Lung	lung
12	chr3:157013000-157017400	Weak transcription	HSMMtube	muscle
13	chr3:157013000-157018600	Weak transcription	K562	blood
14	chr3:157013000-157032600	Weak transcription	NH-A	brain
15	chr3:157013200-157015600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:157013200-157017400	Weak transcription	HSMM	muscle
17	chr3:157013200-157017400	Weak transcription	NHLF	lung
18	chr3:157013200-157019600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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